Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2220 ATGAGAAACTATAGAATGGCGAAACGGCATTGTTACCCACTATCAATTGCACATTCAATTTCAGGTCACCAGAATTCTTCACTTCTTCTTGATTCTCTCTACTGCTTTGAAGAGGAGCTTGGAGATGGCCATTCCCAACCAAAGGTCGAAGCTTTCTCAATCAATGTTAACATCAATTCCCCAAACTCTGTGTTCTTGTCGGACAGAGACTTTCTCTGGGAAGACGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAAAAATAAGCTCCACAACATTCTCCCACACAATCCTTCTCTAACTGCAGCTCGCTCCAAGGCGGTTGAATGGATTCTCAAGGTCAATTCCCATTACTCTTTCACTGCCCTCACCGCCGTTTTGGCTGTTGATTATGTCGATAGGTTTCTCTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCTTCTTTATCTCTCGCTGCTAAAGTGGAGGAAACCCAAGTCCCCCTTCTTTTAGACCTCCAGGTGGAGGAAAATGAGTACTTTTTCGAAGCTAAGACCATTACAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCAGTGAACCCACTTTCCTTTCTGGACTATATTGTAAGACGCCTCGGTTTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAGATGTGAAAGATTACTTCTCTCTGTCATTATAGATTGTAGATTCGTATGTTTTCTTCCATCTGTAATAGCAACCGCCATTATTTTTCAAGTTATCAACGACATAGAACCCCTAGTCGCCGCAAAATACCAGGATCAGCTTCTGGGTATTCTTCAAATCGACAAGGATAAAATGGAGGATTGCTCACGATTCATCTTAGAGGCTTCATCGAGAGGACACAAACACGAGTGGAAGAATAAACAAAGATTTGGTTTAGTCGACATGTCGTGCAGCTCAGATGATGGGAATAGGAATGTGGACATTGTCGTGTCCTCGCCGGAGACAGCAACTAAGAAGAGAAAAATTGATGAACAGCCACCGTAG 1056 43.56 MRNYRMAKRHCYPLSIAHSISGHQNSSLLLDSLYCFEEELGDGHSQPKVEAFSINVNINSPNSVFLSDRDFLWEDEELVSLFSKENKNKLHNILPHNPSLTAARSKAVEWILKVNSHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMTHLTAIASLSLAAKVEETQVPLLLDLQVEENEYFFEAKTITRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSEFLCRCERLLLSVIIDCRFVCFLPSVIATAIIFQVINDIEPLVAAKYQDQLLGILQIDKDKMEDCSRFILEASSRGHKHEWKNKQRFGLVDMSCSSDDGNRNVDIVVSSPETATKKRKIDEQPP 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30740319 30741636 + ClG42_05g0222000.10 Clacu05g2220 249967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2220 351 Gene3D - 101 204 - -
Clacu05g2220 351 FunFam D6-type cyclin 87 204 - -
Clacu05g2220 351 Gene3D - 205 293 - -
Clacu05g2220 351 CDD CYCLIN_AtCycD-like_rpt1 103 201 - -
Clacu05g2220 351 SUPERFAMILY Cyclin-like 73 204 IPR036915 -
Clacu05g2220 351 ProSitePatterns Cyclins signature. 104 135 IPR048258 -
Clacu05g2220 351 CDD CYCLIN_AtCycD-like_rpt2 206 292 - -
Clacu05g2220 351 SMART cyclin_7 109 197 IPR013763 -
Clacu05g2220 351 PANTHER CYCLINS 76 262 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu05g2220 351 SMART Cyclin_C_2 206 323 IPR004367 -
Clacu05g2220 351 FunFam CYCLIN D32 205 294 - -
Clacu05g2220 351 Pfam Cyclin, N-terminal domain 86 204 IPR006671 -
Clacu05g2220 351 Pfam Cyclin, C-terminal domain 206 307 IPR004367 -
Clacu05g2220 351 SUPERFAMILY Cyclin-like 207 302 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1182 Clacu-Chr5:10889775 Clacu05g2220 Clacu-Chr5:30740319 1.80E-67 dispersed
Clacu05g2220 Clacu-Chr5:30740319 Clacu08g1308 Clacu-Chr8:23029273 2.50E-34 dispersed
Clacu01g1776 Clacu-Chr1:29953695 Clacu05g2220 Clacu-Chr5:30740319 5.60E-60 wgd
Clacu02g0668 Clacu-Chr2:6681708 Clacu05g2220 Clacu-Chr5:30740319 2.00E-58 wgd
Clacu05g2220 Clacu-Chr5:30740319 Clacu08g1775 Clacu-Chr8:27172861 6.20E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2220 K14505 - csv:101218302 578.556