Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2234 ATGGGTTCATGTGAGGCAGCGGTGGTAGCAATGAGCATGGCAAAAAGCAGCGAATCTCAGTTTCCGGATCTTAGGAAGCAGCTTAGGGCATTTGAAAGCGATTCGTCGGAGATCATCACGCTCTGCGAGGCGGAATATGTGGAGAAAATCCTCGAGGAAACCTTGAGGAAATTGCTTGTGCACAAGCAATTGTTCTTGCTCCAGAAGCAGTGCAATTCCTCTGCAACTTCCGCGGAACTTTTACGCAGAAAGAATCGTCGCGGTTCTGTGATTCAGCAGGTTAATCAGCCACTGCAATTGCCTTTGCTTTCTCCGGTGAGCTCTGAACATTTAAGAGCGACGTTCTCCCCCAATTTGTCTCCACTGGCAATCCGCTCCCTGATCGAGGCCGTTCCGACGAAGTGCCCTCTATCCCACCAATCCCTAGAAAACTCGTCGATTGTTCCCGACGGCGATAACAGCGGTCCTGGAAACCGGCGAACCCTCGGAGTTGCCGGGCAAAAACTTGGGCTGGGCCAACCAATGTGGGGGCGTGGCCACCCGAAAAGCTGCTCTCTTTTAACTTTACATCGTGTCATTGGGATACATATCCCAGGTCGCACTGAAACTATGGCGGATAAGGAGAATATATTTCGATTTACTAGGGGTTCTAAGAAGAGGGCCGCCGAAGCCGCTACCCCCGACGACCGCTCTGCTAACAAGAAGAGAGTCGTTCTTGGAGAGCTCCCTATTTTACAGAATGCTACTTCTTCCGTCGATCGTAAGTCCAGGTCTAGAGCCACCAGGCAGAGGCGGAGAGTAAAATCAAGGGATACTGCCGGCACAAGTGCTGCTGCTGCTGCTGCTGCTGCTCCTGAAATCAATACACTTCCGGAAGGCGATGTCAAGTTATCAGATGAGGGCAATTCGGAAGACCCGCAAATGTGCAGGGTTTACGCCTCTGATATTTATGAATATCTTCGCGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTACAAAAGGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTAGACAGATACTTATCTCTAAATGAAATCAGCAGGCAAAAACTTCAGTTGCTGGGCGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATCAGTCCTCCACATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAAGCTGAAATATTGAAGTCACTAGAATTTGAACTTGGAAATCCCACAATAAAGACGTTTTTAAGGAGATTCACAATGATTGCTCAAGAGACTTATGAGTTTAATACTTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTCTTACCGTCTCTCATTGCTGCATCTGTCATATTTCTAGCACGATTTATGATCCAACCCAAGAAGCATCCTTGGACCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATCAAAGATTGCGTTCTACTTGTACATGATTTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTATCTGTCCTGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTGTCTACTCGATTGCATTTAAGCTTGCACTTTTCTTTAACCTTCTATACTGA 1791 45.34 MGSCEAAVVAMSMAKSSESQFPDLRKQLRAFESDSSEIITLCEAEYVEKILEETLRKLLVHKQLFLLQKQCNSSATSAELLRRKNRRGSVIQQVNQPLQLPLLSPVSSEHLRATFSPNLSPLAIRSLIEAVPTKCPLSHQSLENSSIVPDGDNSGPGNRRTLGVAGQKLGLGQPMWGRGHPKSCSLLTLHRVIGIHIPGRTETMADKENIFRFTRGSKKRAAEAATPDDRSANKKRVVLGELPILQNATSSVDRKSRSRATRQRRRVKSRDTAGTSAAAAAAAAPEINTLPEGDVKLSDEGNSEDPQMCRVYASDIYEYLRAMETDPRRRPLPDYIGRVQKDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNEISRQKLQLLGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRRFTMIAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLIAASVIFLARFMIQPKKHPWTSRLEHFTGYKPADIKDCVLLVHDLYLSRRGGALAAIREKYKQHKFKFVSVLPSPPEIPIPYFEDVVYSIAFKLALFFNLLY 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30812053 30817839 - ClG42_05g0223400.10 Clacu05g2234 249981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2234 596 PANTHER CYCLINS 299 557 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu05g2234 596 SUPERFAMILY Cyclin-like 304 443 IPR036915 -
Clacu05g2234 596 SMART Cyclin_C_2 446 569 IPR004367 -
Clacu05g2234 596 ProSitePatterns Cyclins signature. 348 379 IPR048258 -
Clacu05g2234 596 FunFam Cyclin A1 433 565 - -
Clacu05g2234 596 SUPERFAMILY Cyclin-like 446 571 IPR036915 -
Clacu05g2234 596 SMART cyclin_7 353 437 IPR013763 -
Clacu05g2234 596 SMART cyclin_7 450 538 IPR013763 -
Clacu05g2234 596 MobiDBLite consensus disorder prediction 216 285 - -
Clacu05g2234 596 CDD CYCLIN_AtCycA-like_rpt2 446 560 - -
Clacu05g2234 596 Gene3D - 329 444 - -
Clacu05g2234 596 MobiDBLite consensus disorder prediction 216 236 - -
Clacu05g2234 596 Pfam Cyclin, N-terminal domain 315 443 IPR006671 -
Clacu05g2234 596 Pfam Cyclin, C-terminal domain 446 568 IPR004367 -
Clacu05g2234 596 CDD CYCLIN_AtCycA_like_rpt1 305 442 - -
Clacu05g2234 596 FunFam Mitotic cyclin 6 331 431 - -
Clacu05g2234 596 Gene3D - 315 565 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2234 Clacu-Chr5:30812053 Clacu08g0740 Clacu-Chr8:17279867 1.10E-82 dispersed
Clacu02g0700 Clacu-Chr2:7212989 Clacu05g2234 Clacu-Chr5:30812053 7.00E-85 wgd
Clacu05g2234 Clacu-Chr5:30812053 Clacu08g1785 Clacu-Chr8:27240746 2.80E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2234 K06627 - csv:101207493 668.692