Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2248 ATGAGTTGCAACGGTTGCCGAGTGCTTCGAAAGGGCTGCAGCGAAACCTGCGTTTTAAGGTCAAGTCTCCATTGGATTGATTCTCCGGAAGCCCAAGGCAACGCCACTCTGTTTCTCGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTTGTGGTCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTACAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCCGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCACTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTCTAGGCAGAGCGAAGAATCATCCATTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA 585 51.97 MSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPACGRTVNPVSGAVGLLYSGNWHVCQAAADTVLNGGVLRPIPGIESSGNPIPNVDDSALTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLALGRAKNHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30895015 30895737 - ClG42_05g0224800.10 Clacu05g2248 249995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2248 194 MobiDBLite consensus disorder prediction 158 179 - -
Clacu05g2248 194 Pfam Lateral organ boundaries (LOB) domain 2 91 IPR004883 -
Clacu05g2248 194 ProSiteProfiles LOB domain profile. 1 98 IPR004883 -
Clacu05g2248 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 124 - GO:0010468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2248 Clacu-Chr5:30895015 Clacu06g1588 Clacu-Chr6:26746811 1.80E-31 dispersed
Clacu01g1814 Clacu-Chr1:30315426 Clacu05g2248 Clacu-Chr5:30895015 6.00E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47750 PF03195 LOB 1.90E-14 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2248 - - - 0.0