Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2249 ATGGCTCTTGAAGCTCTGAATTCTCCAACAACTCCATCACCGGCGCTTCACTACGACGACCCAAGCCTCAATTCGTTGGAGTCTTGGTCTAAGAGGAAGAGGACTAAGCGTCCACGTGGTTTCGACAACCCTCCTACAGAGGAAGAGTATTTAGCGCTATGTCTTATCATGCTTGCTCGCGGTGGCGCCACCGCTACTACCGCCGACTCTGACAACCGACTTGAATATGAAGTTCCGATTCCGGCTCAACCCATATCGGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGTAACAAGGCTTTTTCATCTTACCAAGCTTTGGGCGGACATAAAGCCAGCCATAGAAAATCAGCTACAGGGGAAGACCATTCCACTTCCTCCACCACAACTACTTCCGCCACCGCCACCGCCACCGCCACCGCCTCCGTCGGTGGAGGTAAATCCCACGAGTGCTCTATTTGTCACAAGTCTTTCCCCACCGGTCAAGCCTTAGGCGGCCACAAACGTTGCCACTACGACGGCGGACTCGGTAACAACAACAACAGCAACAATCACATACAGAGTCACAACAACGCCGCCGCCCCCGCCGCTGTGACATCTTCGGAAGGGGTTGGGTCCACCCACACACAGAGTCACAGCCACCGCGACTTTGACCTGAACCTCCCAGCCTTGCCGGAGCTTTCACCGGGATTCTTCATCTCTGCCGGCGACGACGAGGTCCAAAGCCCATTACCTCTGAAGAAGCCTCGTATATTAACAATTCCCAAAATCGAAATTTCTCAAAATTAA 789 52.47 MALEALNSPTTPSPALHYDDPSLNSLESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATATTADSDNRLEYEVPIPAQPISVVKLSYKCSVCNKAFSSYQALGGHKASHRKSATGEDHSTSSTTTTSATATATATASVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGLGNNNNSNNHIQSHNNAAAPAAVTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRILTIPKIEISQN 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30908548 30909336 - ClG42_05g0224900.10 Clacu05g2249 249996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2249 262 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Clacu05g2249 262 Pfam C2H2-type zinc finger 92 117 IPR013087 -
Clacu05g2249 262 Pfam C2H2-type zinc finger 149 173 IPR013087 -
Clacu05g2249 262 MobiDBLite consensus disorder prediction 181 208 - -
Clacu05g2249 262 SUPERFAMILY beta-beta-alpha zinc fingers 92 171 IPR036236 -
Clacu05g2249 262 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 13 226 IPR044653 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Clacu05g2249 262 SMART c2h2final6 149 171 IPR013087 -
Clacu05g2249 262 SMART c2h2final6 92 114 IPR013087 -
Clacu05g2249 262 MobiDBLite consensus disorder prediction 181 220 - -
Clacu05g2249 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Clacu05g2249 262 MobiDBLite consensus disorder prediction 1 44 - -
Clacu05g2249 262 MobiDBLite consensus disorder prediction 122 136 - -
Clacu05g2249 262 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Clacu05g2249 262 MobiDBLite consensus disorder prediction 1 18 - -
Clacu05g2249 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 171 IPR013087 -
Clacu05g2249 262 Gene3D Classic Zinc Finger 90 171 - -
Clacu05g2249 262 MobiDBLite consensus disorder prediction 112 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2249 Clacu-Chr5:30908548 Clacu06g1686 Clacu-Chr6:27574787 4.90E-11 dispersed
Clacu02g0717 Clacu-Chr2:7429760 Clacu05g2249 Clacu-Chr5:30908548 4.20E-49 wgd
Clacu05g2249 Clacu-Chr5:30908548 Clacu08g1802 Clacu-Chr8:27330986 1.00E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47751 PF13912 zf-C2H2_6 1.60E-12 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2249 - - - 0.0