Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2250 ATGGATTCTTTCGGAGGTTTCAATGGGGAAGGGGAATGGGATTTATGCAGCTCAATTTTATCATTGGAAGACCTTGATTTTACGCCAATTAATCTCCCTCAACCCACTTCAGGCTTCATGGCTGATGCTTGGTTTTGTTCTTTGGATTCCATCACTGCTAATTTGCCTTCTTGTCATGTTGGTAATGCTATCGATCAATTTCCTTTTATTGCTGCTGCTTCTGATCAACATCATCATCATCACGTGTCCATGTCCATTGAAGAGAATAAGATGGAATCCATTTTCTCAGCTTCTACTACTGACATCTTGCTCCAAGAAATCACTGGCTTTTCGAGTGAAGATAAATTTCTTGACATGGATGCTCAAACCCACCTAGGGGATGATGATCATAATAATGCTACCAATTCTGCAAATGCATTATTCCACCACAAAAGGAAATCCATTGTTGTCGATGATGATCATAACAAGCTCATCAACCCCAATAAGAAAATTCGTAATCCAAACAATGTGCAGAAAAGTAGGAAGGGCAGAGAGTCAAGTGGTAAAAGTAATAGCTCTAGCAAAGAGAAAGTGATGAGCAGTACTCGGCGGCGCAAATGTGAAGAAGAAGAAGAACAGGAAAATGGAGGGTCGTGCGATATGAACAGTTGCACCAGCGATAACTCATCAGAAGATGACAATGCTTCACAAGATACCAATGGCGGTGGCTCTGTTTTAGAGCCACCAAAACCCAAAACAAGAGCCACCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAACGGCTTAGAATTCTGCAGAAGCTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTAAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGCTGTGGATGTATGCCCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA 1011 41.64 MDSFGGFNGEGEWDLCSSILSLEDLDFTPINLPQPTSGFMADAWFCSLDSITANLPSCHVGNAIDQFPFIAAASDQHHHHHVSMSIEENKMESIFSASTTDILLQEITGFSSEDKFLDMDAQTHLGDDDHNNATNSANALFHHKRKSIVVDDDHNKLINPNKKIRNPNNVQKSRKGRESSGKSNSSSKEKVMSSTRRRKCEEEEEQENGGSCDMNSCTSDNSSEDDNASQDTNGGGSVLEPPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSFL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30921332 30923159 + ClG42_05g0225000.10 Clacu05g2250 249997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2250 336 MobiDBLite consensus disorder prediction 151 264 - -
Clacu05g2250 336 MobiDBLite consensus disorder prediction 210 236 - -
Clacu05g2250 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983(InterPro)
Clacu05g2250 336 SMART finulus 258 307 IPR011598 GO:0046983(InterPro)
Clacu05g2250 336 MobiDBLite consensus disorder prediction 191 205 - -
Clacu05g2250 336 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 84 312 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2250 336 CDD bHLH_AtIND_like 253 315 - -
Clacu05g2250 336 Gene3D - 254 310 IPR036638 GO:0046983(InterPro)
Clacu05g2250 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 318 IPR036638 GO:0046983(InterPro)
Clacu05g2250 336 Pfam Helix-loop-helix DNA-binding domain 262 302 IPR011598 GO:0046983(InterPro)
Clacu05g2250 336 FunFam Basic helix-loop-helix transcription factor 253 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2250 Clacu-Chr5:30921332 Clacu10g1039 Clacu-Chr10:22265571 1.60E-38 dispersed
Clacu03g0858 Clacu-Chr3:10227376 Clacu05g2250 Clacu-Chr5:30921332 1.60E-18 transposed
Clacu02g0721 Clacu-Chr2:7480653 Clacu05g2250 Clacu-Chr5:30921332 8.30E-37 wgd
Clacu05g2250 Clacu-Chr5:30921332 Clacu08g1804 Clacu-Chr8:27353810 2.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47752 PF00010 HLH 1.00E-08 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2250 - - - 0.0