Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2265 ATGATCCTCCTCCGCCTCTCTGTTTTCGCTGTTGTTCTTTTTCAGATATCCTCCGCCGTGGGCGCCGGCACAAGGTCTTACTGGACGGTGAAGTCCTTGCCGGGATTGTCGGGGCCTCTGCCTTTCGAGCTGGAAACAGGATACGTAGGAGTGGGAAATTCGGAGGAATTTCAGCTGTTTTATTATTTTATCAAATCTTATGGAAATCCCAAAACGGATCCTCTGATTTTGTGGCTCACTGGAGGCCCCCGTTGCTCTACTCTCTCTGGAATTGCCTTTGAAAGTGGTCCAATAAATTTTGAGGGAGAACCTAAAAATGGGAGCATTCCTCAAATAATCTTGAACCCTTACTCATGGACCAAGAAATCCAGTATAATATATATAGACTTACCGGTTGGCACGGGTTTTTCATATGCTAAAACTTCAAAAGATCATAAATCAGGAGATTATGAACAAGTTCACCATTCCCTTCAATTTTTGAGAAAGTGGTTGGTCAATCATCCAGAATTTATATCAAATCCATTCTATGTTGCTGGAGATTCTTACGCTGGTATGATTATTCCAGTTGTTGTTAAAGAAATTTTAGAAGGAAATGATAAACATATTTTTCCATTCATAAATTTTCAGGGATACATATTGGGAAATCCTATCACTACCCCTCATTCAAATAAAAATTTTGAAATCCCATTTGCTCATAACATGGCCCTCATCTCGGATGAATTGTTTGAGTCGTTGAAAACTAGTTGCCAAGGAGAATACGTGAACATCGATCCAAATAACGTGGAGTGCTTAAGACATCATGATATGTTTAAAAAGTGTACTTCTACCGTTCTAGATGGATGTATTTTATGGCCCAAGTGTTCATCTTTGAAAGAACCAGATGTGTCTGAACCAAATATGTTTGATACTCATAGATCTCTCTACAACGTTCCTGTTGATCGTAGATGTCGTGTGTATGACTACCTTCTTGCTTATTATTGGGCTAACAATGACCAAGTTCGAAAAGCACTTCATATACGTGAGGGAAGCATTGGAGAATGGATTAGATGTCGTGATAGAGATCATTACAATGTTGAGCATGATAGTGTTTTTCCTTATCACGTGAACCTTAGTTCTAAAGGTTATCGATCACTAGTCTATAGCGGAGACCATGATATGATAGTATCGCATATGGACACTCAAGCATGGATCAAATCTCTAAATTATTCTATAGTAGATGATTGGAGGCCATGGTACATCGATGATGAAGTTGCCGGATACACGAGAAGTTTTGCAAATAAGATGACATTTGCAACTCTAAAAGGTGGAGGACATACAGCAGAATATAAGCGTAAAGAATGCAGCATATTATTTAATAGATGGATAGTGGGAGAATCCTTATAA 1383 38.9 MILLRLSVFAVVLFQISSAVGAGTRSYWTVKSLPGLSGPLPFELETGYVGVGNSEEFQLFYYFIKSYGNPKTDPLILWLTGGPRCSTLSGIAFESGPINFEGEPKNGSIPQIILNPYSWTKKSSIIYIDLPVGTGFSYAKTSKDHKSGDYEQVHHSLQFLRKWLVNHPEFISNPFYVAGDSYAGMIIPVVVKEILEGNDKHIFPFINFQGYILGNPITTPHSNKNFEIPFAHNMALISDELFESLKTSCQGEYVNIDPNNVECLRHHDMFKKCTSTVLDGCILWPKCSSLKEPDVSEPNMFDTHRSLYNVPVDRRCRVYDYLLAYYWANNDQVRKALHIREGSIGEWIRCRDRDHYNVEHDSVFPYHVNLSSKGYRSLVYSGDHDMIVSHMDTQAWIKSLNYSIVDDWRPWYIDDEVAGYTRSFANKMTFATLKGGGHTAEYKRKECSILFNRWIVGESL 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31025333 31030555 - ClG42_05g0226500.10 Clacu05g2265 250012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2265 460 FunFam Carboxypeptidase 315 459 - -
Clacu05g2265 460 FunFam Serine carboxypeptidase-like 11 24 460 - -
Clacu05g2265 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 454 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Clacu05g2265 460 Pfam Serine carboxypeptidase 34 456 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2265 460 SUPERFAMILY alpha/beta-Hydrolases 29 457 IPR029058 -
Clacu05g2265 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2265 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2265 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2265 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2265 460 Gene3D alpha/beta hydrolase 33 460 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2265 Clacu-Chr5:31025333 Clacu05g2868 Clacu-Chr5:35867962 3.80E-184 dispersed
Clacu05g2265 Clacu-Chr5:31025333 Clacu05g2267 Clacu-Chr5:31049870 1.70E-06 proximal
Clacu05g2264 Clacu-Chr5:31016737 Clacu05g2265 Clacu-Chr5:31025333 1.50E-185 tandem
Clacu05g2265 Clacu-Chr5:31025333 Clacu05g2266 Clacu-Chr5:31040020 1.30E-155 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2265 K16296 - csv:101207623 719.539