Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2266 ATGCCCACCGCCGTCTTCCGCGTCTCTGTTCTGTTCGTCTCTGTTTTTCAAATCATCTCCGCCGCCGGGTCGTCGCGCTGGACGGTGGAGTATCTGCCGGGATTTGCAGGCCGTCTCCCATTCGAACTGGAAACAGGATATGTGGGTGTTGGGGATTTGGAGGAAGTGCAATTGTTTTATTATTTTGTGAAATCGGAAGGAAATCCAAAGACGGATCCTCTGCTTTTTTGGCTCACCGGAGGCCCCGGTTGCTCTGCTTTAACTGCACTTGCCTTTGAAGTTGGTCCCATAAATTTTAAGATTGAGCGATACAATGGGAGCTTACCTAAAATAATCTTGAACCCTTATTCGTGGACGAAGAAATCCAGTATAATAATGGTAGATTTGCCGGTGGGAACAGGGTTTTCATATGGTAAAACTCCACAATCTCTTAAGACTGGAGATTTTAATCAAGTTCATCATTCTATTCAATTTTTTAAAAAGTGGTTGACTAATCATCCAGAATTTATATCTAATCCATTTTATGTGGGTGGAGATTCATACTCGGGTATTATCATTCCGGTTATTGCTCAAGAAATTTTGGAAGAAAATAAGTATGCTCCCTATGTAAATCTTCAGGGATACATATTGGGAAATCCAGTCACCATTCGCGACACGTATCAAAATTTTGCAATTCCTTTTGCTCATAAAATGACTCTTATCTCTGATGAGTTATTTGAGTGTGTTTCAAAGATAGAAAAGTCAAGTATTTTGTTGCCAAAATGTTCGTTTCATTCTCCAAAGAAACAAAAAGATGCATTTGATCGAAGATCTCTTTACAATACCCCCAAAGTGCTTCTTGATCCCGAGCCAGCACTTCCTTCTCTTGATTGTCCTGGAAGCATTGGAGAATGGACAAGATGTAGAGATCGGCAAAATTACAACTTTGATGTTGAGAGTGCTTTTCCTTATCATGTCAACCTTAGTTCGAAAGGTTACAAGTCTTTGATTTATAGTGGGGATCATGATATGATTGTATCGCATTTGGACACTCAAGCATGGATTAAATCTTTAAATTATTCCATTGTTGAGGATTGGAGACCTTGGTTTATTGCAGATCAAGTAGCTGGATATACAAGAAGCTATGCAAATAAGATGACATTTGCCACTATAAAAGGTGGAGGGCACACGGCAGAATATACACAAAAAGAATGCAGTGTAGTATTTAGTAGATGGATAACTGGAGAACCCTTATAA 1236 39.64 MPTAVFRVSVLFVSVFQIISAAGSSRWTVEYLPGFAGRLPFELETGYVGVGDLEEVQLFYYFVKSEGNPKTDPLLFWLTGGPGCSALTALAFEVGPINFKIERYNGSLPKIILNPYSWTKKSSIIMVDLPVGTGFSYGKTPQSLKTGDFNQVHHSIQFFKKWLTNHPEFISNPFYVGGDSYSGIIIPVIAQEILEENKYAPYVNLQGYILGNPVTIRDTYQNFAIPFAHKMTLISDELFECVSKIEKSSILLPKCSFHSPKKQKDAFDRRSLYNTPKVLLDPEPALPSLDCPGSIGEWTRCRDRQNYNFDVESAFPYHVNLSSKGYKSLIYSGDHDMIVSHLDTQAWIKSLNYSIVEDWRPWFIADQVAGYTRSYANKMTFATIKGGGHTAEYTQKECSVVFSRWITGEPL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31040020 31043601 - ClG42_05g0226600.10 Clacu05g2266 250013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2266 411 Pfam Serine carboxypeptidase 33 255 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2266 411 Pfam Serine carboxypeptidase 289 407 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2266 411 SUPERFAMILY alpha/beta-Hydrolases 29 409 IPR029058 -
Clacu05g2266 411 FunFam Serine carboxypeptidase-like 19 22 256 - -
Clacu05g2266 411 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 405 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
Clacu05g2266 411 PRINTS Carboxypeptidase C serine protease (S10) family signature 379 392 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2266 411 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2266 411 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2266 411 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Clacu05g2266 411 Gene3D alpha/beta hydrolase 24 276 IPR029058 -
Clacu05g2266 411 Gene3D - 285 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2266 Clacu-Chr5:31040020 Clacu05g2868 Clacu-Chr5:35867962 8.90E-161 dispersed
Clacu05g2265 Clacu-Chr5:31025333 Clacu05g2266 Clacu-Chr5:31040020 1.30E-155 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2266 K16296 - csv:101210918 491.5