Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2275 ATGGGCGTTGTTTGTTGGCTTCTGGGGGAAGTGGTTTGGAACTTTGGATGGATTGAAGTGAAGGATTTATGTTGCTTTTCTGCTACTTTCTGCTGGTTTCTTCTCTTAATCTGTGATGTCTTTTGCTGGATGACGAGTACTTTAATGGCAGGAATGTTTAATGGGGAGGGATCGTCGTCGGTAACTTCGTCGCCTTTGCAGTTCTTTCCATGGTCGTTATCGCCCGGTATAGGGTCACCATACCCTTTTCTAAGGGAGCTCAAATCTGAAGAGAGGGGGTTGTGTCTGATTCACCTTCTTCTTGCCTGTGCCAATCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTTGGCCTGGAGCAAATTTCCCACCTTGCTTCACCCGACGGGGACACAATGCAGCGGATTGCTGCCTACTTCACCGAGGCACTCGCTGACCGGATACTCAAATCCTGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAAATATTGTCAGTCCCTGAAGAGATTCTTGCTCAGAGATTGTTCTTTGAACTATGTCCTTTCTTGAAGCTTGCTTATGTGATAACTAATCAGGCTATTATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCTCAGTGGATAAACCTTCTTCAAACATTGAAAGATAGGCCAGATGGTCCACCCCACTTGAGAATAACTGGAATTCATGAACAAAAAGAGGTGTTGGAACAAATGGCTCTTCGGCTTACCGAAGAGGCCGAAAAATGGGATATACCATTTCAATTCACCCCAGTTGTTAGCAAATTAGAAAACCTTGACCTTGAAAGTTTAAAGGTCAAGACAGGTGAAGCACTTGCAGTTAGCTCCGTACTTGAACTTCACTCGGTTTTGGCTACAGACGACGATAAGAAAACGTCACCATCTGCATCGAAGAACTTGCAAAAACTCCTACGTATGAAGCAGCGAACACTCGGAGAGTGGCTCGAGACAGATTCGTTGCAAGTTTTTGGTAGTCCTGATTCGGCCTCAGTATCTTCCCCATCAGGATTGAATCCTTCCCAAAAGATGAACAGTTTTTTGACTGCGCTATGGGGCCTTTCTCCAAAAGTTATGGTAATAACTGAACAAGAATCAAACCTGAATGGATCTGCTTTCATGGAGAGAGTACTAGAAGCATTAAACTTCTATGCCGCATTGTTTGATTGCTTAGAGTCAACCGTGTCGAGATCATCGATCGAGCGACAAAGGGTCGAGAAGATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGTGAGGGGGTGGAGAGGACAGAGAGGCACGAAAAGCTCGAGAGATGGATACTGAGGCTCGAATCCGTGGGGTTCGGAAAGGTTCCATTGAGTTATCATAGTATGTTACTGGGAAGTAGATTGTTGCAGAGCTATGGATATGATGGCCGCACCGATCACATCTCTTATTTTTCCCCTCTGCCGTTGCCGACGCCGATCGCCGATCGCCGCCACGCCTCCACCGCCATTTTTCTTTCTCACTGTCTGCTGCAGGCTCACGCCGCCACCACTCCAACCCCGTTTTCCCTCTCTCCTGAGGTGCCCCGTTTCTACACCAATCTCAATCTAACCTACTCGCCGTCCGCCCCATCTCTCAGTGATCAGTATCTGCACGCACGGCCTGCGTTTCTTCCAACACATTCATCTCCTTCTCTCTTGATGGAGGGTTCCATTGCTGAAGAACTTTATTCCGAGAGTTTACAGTCAACAAAATCAAAATTGGGTGATTTGTCATTATCTGATTACAGACAAAATCGGCCGTCAGGTTCTGGTGTGGATGACTCGTGCGAAGATGACGGATCTTTATGGGGTGGTTCTGATGAAGGCTTGGAGGAAACAACTGATTTGGACAGGGAGTGGCAGAGAAGACATGACCAATTTCATACGATTGGATACCGCGATGGTTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAATGTTGGCTTCAAGCAGTCAGTCGCTGTCGGATATAAGTTGGGTCTTGTCAGAGGTGTTAGCAGTACGGGTGCTGCCGTGCCACGAGGCATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAACAGTCACTCCCTGAGGTCCACAAAGTGAAGCACCAGACTGAGCATATCCAAGAAAGAAACGAATGGGGAAAGCTTATCCCCCACTCGCATTCGCCTGCCATTCCATTTGTGCTTGAAGCAAGTAGGCGATGCGAATCTATGGTAAAGAGATTCCGTCCTCCCTTAATGCATGTGCTTGCTTCCCTTCCTGATGACTTGAAAGAGAAGCTAGCAGGAACTGAAGAGAACCGAAGAAAATTTCAAAGCTTGTATGAATCTGTGAACTCTCTTTCGACAGTAGATGCACTTAGGCTATTCAATGATGATATTACGGCACAGCGCACAAAAGAAGAGCGTGTAAATGAAAATACAAATTCCCAAACAAAGGATTTGTCGAAGCAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTCTACCCAAATCACCTGCTCTGAATCTTCATTTACATGAAGAACATGCGTGTCATACTTTGGGGTATACGCCGTTAAAAAAAAAGGCTCTTCAACAACTCTCATCTTTGGATGTAGGTTGTTTAGGGGATCTGGCGTGGGTGGATAGTAGGTTCTATTCTTTGTCCGTGTTTGATTGGGAAGTTCCGGGTCGAAGAGTTGCTATCGGTGAAATTCTTTCTCGAATCTCTTATCTTTGTAGAGATTGTCACGCCGTATGCCTTATTCATCGTCAGACCGGTCCTGGATCTATTCTTCTATACGATAAATCGCCATCTCGTAGTACCACCACGACACCGATTCTCGTTATTTTTCCGAGCCCCCCCCATGCCGGCCGTGACTTCGACTTTGAGTATGATGAATGA 2991 45.47 MGVVCWLLGEVVWNFGWIEVKDLCCFSATFCWFLLLICDVFCWMTSTLMAGMFNGEGSSSVTSSPLQFFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLKVKTGEALAVSSVLELHSVLATDDDKKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFGSPDSASVSSPSGLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGVERTERHEKLERWILRLESVGFGKVPLSYHSMLLGSRLLQSYGYDGRTDHISYFSPLPLPTPIADRRHASTAIFLSHCLLQAHAATTPTPFSLSPEVPRFYTNLNLTYSPSAPSLSDQYLHARPAFLPTHSSPSLLMEGSIAEELYSESLQSTKSKLGDLSLSDYRQNRPSGSGVDDSCEDDGSLWGGSDEGLEETTDLDREWQRRHDQFHTIGYRDGLIAGKEAAAQEGFNVGFKQSVAVGYKLGLVRGVSSTGAAVPRGIGHQWYRTYEYSDYNSSDEQSLPEVHKVKHQTEHIQERNEWGKLIPHSHSPAIPFVLEASRRCESMVKRFRPPLMHVLASLPDDLKEKLAGTEENRRKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNENTNSQTKDLSKQNSDYGRLRKFYGELEALLPKSPALNLHLHEEHACHTLGYTPLKKKALQQLSSLDVGCLGDLAWVDSRFYSLSVFDWEVPGRRVAIGEILSRISYLCRDCHAVCLIHRQTGPGSILLYDKSPSRSTTTTPILVIFPSPPHAGRDFDFEYDE 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31104180 31113539 - ClG42_05g0227500.10 Clacu05g2275 250022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2275 996 ProSiteProfiles GRAS family profile. 87 514 IPR005202 -
Clacu05g2275 996 MobiDBLite consensus disorder prediction 601 633 - -
Clacu05g2275 996 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 91 484 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu05g2275 996 Pfam Essential protein Yae1, N terminal 653 690 IPR019191 -
Clacu05g2275 996 Pfam GRAS domain family 96 485 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1334 Clacu-Chr3:25898272 Clacu05g2275 Clacu-Chr5:31104180 3.30E-151 dispersed
Clacu05g2275 Clacu-Chr5:31104180 Clacu11g1100 Clacu-Chr11:13857617 2.50E-55 dispersed
Clacu05g2275 Clacu-Chr5:31104180 Clacu03g0137 Clacu-Chr3:1501243 9.40E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47755 PF03514 GRAS 5.60E-120 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2275 - - - 0.0