Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2280 ATGCCGCCAGAACCTTTGCCGTGGGACAGGAAAGACCTCTTCAAGGAGAGGAAACACGAGAAGTCGGAGGCCATAGGGTCTGCGGCCAGATGGCGGGACTCTTATCATGGATCTCGCGAGTTCAATCGGTGGGGTTCTGCTGACTTTCGAAGACCTACTGGTCATGGTAAGCAGGGTAGTTGGCACCAGTTTTCTGAAGAATCTAGTCACGGTTATGGGCCTTCTCGGTCATTCAGTGACAGGGTGTTAGAAGATGAGAGCTTCCGGCCGTCAGTTCCTCGTGGAGATGGAAGATATATTAGAATCGGTAGAGAAATTAGAGGTTCTTTTAGTCATAGAGACTGGAGAAGTCACTCCAGGGAGACCAACAATGGATTTGGGAACCCATCGCGAAGGCCATCATCGGCATCGCAGGATGTGAGTTCTGATCAGAGGTCAGTAGATGATACGGTGACATATTCCTCTCCTCAATCTGTTCATGGGTTAGAAAATGGCCCGAGGTCCGATGTGGAAGTTTCCCTTGGCTCCACTGATTGGAAGCCACTTAAGTGGTCCCGATCTGGGAGTTTGTCTTCCCGGGGATCTGCTTACAGCAGTTCGACGAACTCGAAGAATGAAAAGGCTGATTTACCTCTTAGAGTTGCATCTCCTATAGAAAGCCCTTCTGCTGAAACTACTGCCTGTGTGACATCTTCTCTGCCTTCTGAAGATGCAATTTCTAGGAAGAAGCCAAGGCTTGGATGGGGTGATGGATTAGCCAAATACGAGAAAGAAAAAGTTGAGGTTCCTGATGGAAGCCTGAGAAAAGAAGTGGCTCTTCTTTCAAGCGGCAGTGCTGAATTAACTCATTCCCTTGGTTCAAACTTTGCTGAGAAAAGTCCCAAAACTTTGCCCTTTTCAGATTGTGCATCTCCTGCAACTCCATCCTCTTTTGCCTGTAGTTCATCATCAGGCTTGGAGGATAAACCATTTAGTAAGGGAGCAAGTATGGATGGCATGATATGTAGTTCACCTGGGTCCAGTTCTCAAAATCTTCAGAAATTATTGTCTAGTATAGAAATGATGGAGATCGGTTCAATTGCTAATTTAGGATCGTCACTTGTCGAACTGTTTCATTCTGATGATCCGAGTACAGTAGAATCATGTTTTGGGAAGTCTACATTGAATAAGCTGCTAGCATATAAAGGTGAAATTTCAAAGAAATTGGAGACTACAGAGTCTGAAATTGATTCTCTTGAAAATGAACTTAAATCTTTGAAATCTGGAAATGGCGGCAATGTTTCTCATAAAAAATCTTGCAGTGTCACACATTTGGTGGAGAATGTGACATATTTCAAAGAACAAGATGGTGTCTCTTGTGTTGCCCCTCGTCCTGCTCCCTTGGTGATAGTTTCGTCTTCTGATGCAACAGTTGAGAAGATGCCAGTCTGCAAGGGTGACATGGGAGTTGAAGATGTTGATACAAAGGCTGATGAAATTGATAGTCCTGGAACTGTGACATCAAAATTTAACGAACCATCCCGAGTGGTAAAGACTGTTGCTTCTGATCTTGTGGTAAATGGTCATTGCTCTGAAGTTACAGATGTAATTGTCCCCGACAAGATGGAAGGGAATTTTCCCGTATCTCGGTCTTTTGTGGACGAACATAAAACAATTGGCTCTGACAATGAATGCATTCTTGCTAAGAGTTGTACCAAGGAATCTATTTATGGTGATTTGATGGCCCAAGCTGGCAGTAGATCATCTCTTTGTGATCAAATTTTTGCGTGTAATAAAGAATATGCAAGTAGAGCTGCAGAAGTAATTTTCAAGAAATTACCAGCGGAAATGTGCAAGATCAGCAGTAAAAGCACCAAAATTGTGTCCTGCTCAGAGACTGAGAAACTTGTTAAAGAGAAATTTCTAATGAGGAGGCAGTTCTTTAAATTTAAGGAGAGTGCATTAACCCTCAGATTTAAAGCCTTGCAACAATCGTGGAAAGAAGGTTTGCTGCATTCTGTGAAGAAATGTCGCTCAAGGCCACAAAAAAAGGAGTTGAGTCTAAGGGTGTCACATTCTGGCCATCAGAAGTACAGGTCTTCAACTCGCTCCCGTTTGGTTCAGCAAGGAGCATGTCAGAACCCTACCCTTAACACAGAAATTGCTGTTCGTTACTCCAGTAAGCTGCTGTTGAACCCTCAAATTAAGCTTTACAGGAATAGTTTAAAGATGCCAGCTATGATTTTGGACAAGAAGGAAAAGATGGCATTAAGGTTCATCTCTCATAATGGGTTGGTTGAAGATCCCTGTGCCGTTGAGAAGGAAAGGAACATGATAAACCCTTGGACTTCAGCCGAGAGAGAGATATTCTGGGAGAAACTATCCTTGTTTGGAAAGGATTTTAAGAAAATTTCTTCATTTCTCGACCTCAAAACCACAGCTGACTGTATCCAGTTCTATTACAAGAACCACAAATCTGATAGTTTTAAGAAGAATAAAAATTTGGAGTTGGGCAAGCAAGTGAAATCTTCTGCCATCACATACTTGGTAACATCAGGGAAAAAATGGAATCCAGACGTGAATGCTACTTCCCTCGATATCTTAGGTGTTGCTTCAGTAATGGCAGCACAAGCAGACTACGACATTGGAAACCAGCAAAAATGTACTCGCCATTTGGGTATGGGAAGGGATGTTGAGTCAAAAGTATCATGTAGTGCTAGCACTCCTTCAAATAAAAACAATTTGGATGCTCTTCAGACTGAAAAAGAAACGGTTGCTGCTGATGTGCTTGCTGGTATATGTGGTTCAATATCTTCGGAGGCCCTTAGTTCTTGCATTACAAGTGCTATTGATCCCAGTGAGGACCACCGGGAGCGGAAGTGTTATAAAGTGGATTCTGCAGTGAAATTGCCTTCATTGTCTGACGTCATGCAAAAAACTGATAATGAGGAACCTTGTTCAGATGATAGTTCTGAGGATGTAGATTCTTCAAATTGGACAGATGAGGAGAAGTCAATATTCATGCAGGCTGTGTCGTCCTATGGTAAGGATTTTGATATGATCTCTAGATGTATCAGGTCAAAGTCTAGGGACCAGTGCAAGGTTTTCTTCAGCAAAGCTCGGAAATGCCTTGGACTGGATTTGATGCATACTTCTGGAGATGTAGGCGAAACACCTGGGAGTGGTAATGACGCCAGTGGGAGTGGGACTGACACAGAAGATCACTGTATTGTGGAAATCTGTGGAGCCCATGGCAGTGATGAATTTGTCTCCAAGTCAATCAACGGTGTATCAACATCTGTTAACATAAATCATGAAGAATCTGTTTCTGCTGTGACTGTCAACATGCGGACCAGTAGTGAATTTGAGGAAAGTACAGTATTGCAACAGTCGGATGAGAAATGTGCTGAGGCTGTTGGAAACTTGATTTCTGAGATATCGAAGGAAGAGGATTTGCCTAGTCCAGATTCTCATTCTGCCTACAATCTCACAAATGCAGCTGCTTCTCTGAGCCAGCCAGTGCACGACCACAAAATTGAAGGCTCTTCTGAAAATACCGAAGGTGGAAGCAAGTGCTGTAATGAACCTGACATTCTGAGATCTGAATCGGTGTCCACTGTTGATGAAAATTCAGCTGCTGTGAGCGAGGGCAGAGCTACAGCGAAGCTTGCATTTGGAGGAGAAGAAGAAGGAAGGAACACTAATTTACATGTTCAGAGTATATTGCAGTGCTCAGTTCAGAATTCAACTGGGTTTGATTCCAATCTTGCTTTAGAGGGCAGCTCCTTAGGACTTGATCCACAAATCTTGCATCCAACTGTTCTTAAAGTGGAACATGTAGAGAAGTCTTGTGTCGAGTCTGAGAACTCTCTTGCTGTCGGGAATTCTGATCCTGGTGTCATTGGAAGGGAACAGATGCTTAACCAAGATATGTTGTCATCAACAGCTGTCTTGCAGGAGGTTAGTGATGTGCATCAAAAGCCTATGAATAGAGATGACTATGCTGAGCATCAAAATAATTTGTTGCACGATAGTGAATCCAAGTTTCCAAGAAGCTATCCTTTCAACGAACAAATCTTTGAGGACATCAATAGAAATATCAATCGCACATATTTTCCTGTTGTTCAAGGGCTGTCAAAGCCAGACATCAATTGTAACAGTTCATATGTTTCTGAGGGCCACTATCTTCAGAATTGTAACAGTTCCAAGCCACACAACCCGGCTGAGCTTCCTTTTTTGCCTCAGAATATAGACTTGGGTCATGATCGTCAGAAGAAAGCTTCATGCAGTGGCAGTGCTTCAGATTCTGATGTTCCACGCAGGAAAGGTGATGTGAAACTGTTTGGTCAGATACTAAGTCATGCCCCTTCCGAGCAAAATTCGAGTTCTGGTTCGAATGGGGGTGGAGAGGAGAATCACATATCCAGCAGCAAATCATGCGACATCGGAGAAAATGTTCCGTTAAGGAGTTACGGTTTTTGGGATGGAAGCAGAATACAGACGGGTTTGTCTGCTTTGCCGGATTCTGCCATTTTACAAGCCAAGTATCCTGCTGCATTCAGTGGCTACTCTGCTACGTCTGTTAAAACTGAACAGCAGCCATTGCAGGCACTCACAAATAATGGTGACCGAAGTCTTAATGGACTAGTGTCCGCTTTTCCAACCAAGGATGGAGTGGTAGATTATCATTCGTATAGGAGTCGAGATGGAGTTAAGATGCGACCTTTCCCAGTTGATATATTTTCTGAGATGCAAAGAAGAAATGGCTTCGATGGTGTGTCCTTGTCAAGTTTACAGCAGCAGGGAAGGGTGCTAGTTGGAATGAATGTTGTTGGAAGGGGAGGTATTCTCATGGGTGGTTCTTGTACTGGTGTTTCAGATCCTGTAGCAGCCATTAAAATGCACTATGCCAAGGCCGAGCAATATGTTGGGCAACCTGGTAGTACATTCACCAGAGAAGATGGTAGTTGGAGAGGAGGTAATGGTGGAGATTTAGGCAGCAGGCATCAAGAAAAGAGTTGTAAATGTAACGACCAACGAGATGAAAACCAACCAATGGCTTATAGTTATGAGGTCGTGTCAACGGCGGAGCAAAAAGTTCCAATGCGCCTATCTGTATCAACATCATCGGCCTTCTTAAGATCCAGCAGTTATATTTGCTTTCTGAAACCAGACAAATCTAAGAAAAAATGGTTTCAAAAGGAGGAGAGTGTGGATGTGATTTCCTTTTTGGAACAATCTCCATTGGACGTTCCTGCACAACCTCCAATAGAAGATGATGTCAAACAAACCGAACCGGAGAATGAACCAAGCGAGCTTGCGCATTTGGAGGCTGCGGAGTCGGCTGTTGCTGAAGCTCAGCTGGCTGTGGTGGTTGAATATCCACCTAGTCCTATCTCCTGTCGGCCAGAAATGTCGGAGGAAACAGCAGCTATTGTGATTCAAACTGCATTTCGTGGATATACGGCAAGGAGAGCATTGAGAGCTCTCAAAGCGTTGATGAGATTGAAGACATTGGTACAAGGGCAATCTGTCAAACGGCAAGTGGCCTCTACTTTAAAATGCATGCAAACCCTTACTCATTTACAGTCAGAGATTCGTGCAAGAAGAATAAGAATGTCGGAAGAAAATCAGGCTCTTCAGCGACAACTTCGTAACAAACGTGAGAAAGATCTCGAGAAGTTAAAATTTGCTATGGATGATGACTGGAATCATAGCACCCAATCTAAAGCACAAATTGAAGCTAAACTATTGAACAAGCATGAAGCTGCAATAAGAAGAGAAAGGGCTCTGGCTTATGCTTACTCTCATCAGCAAACATGGAAGAACTCTTCAAAAACTGCAACCCCCACTGTCATGGATCCAAACAATCCCCACTGGGGTTGGAGTTGGTTGGAGAGGTGGATGGCAGCTCGTCCGTGGGAATCTCAAAGCACCACTGATCAGCCGGATCACATTTCTGTCACGAGTGTTGCAACTCGTGCATCTGTGGTCGACATTCTCCAAATTTATGCTCGGCGTGATCAGAACCCTTCTACCAAGCTTTCTCCAAAGTCTCCTACAAGCCAAAAGTCAAGCCAATTGCCTAAGTATCATTCACCTTCAACTCCCAAGGCACTATTTTCATCATCTGGCAGAAAGAAAACAAATGCAGCCAACTCAAGGATAGGCAGCTGGGGCAGAGATGAAGACATAAGGAGCATCACTAGTGTCAAATCAAAGCTCTCCCGGAGGCATACTATTGCAGGATCATCATTCAGGGATGATGAAAGCCTTGCCAGTTTACCTTCAGTTTCAAGTTACATGACGCCATCGAAGGCTGTGAAGAATCGGTCCCGGTTGGCAAGTTCATCCAGAACAGAGAAGAAAGGAACAATGGAAAAAGGATCTGCAAGTGCAGGTTCTGCAAAAAAACAACTTTCCTTTTCAGCTTTTCCTGTTAAGCCAAGGAGGCAATCTAGTCCTCCAATTGTGAATACTGGCTAA 6465 43.68 MPPEPLPWDRKDLFKERKHEKSEAIGSAARWRDSYHGSREFNRWGSADFRRPTGHGKQGSWHQFSEESSHGYGPSRSFSDRVLEDESFRPSVPRGDGRYIRIGREIRGSFSHRDWRSHSRETNNGFGNPSRRPSSASQDVSSDQRSVDDTVTYSSPQSVHGLENGPRSDVEVSLGSTDWKPLKWSRSGSLSSRGSAYSSSTNSKNEKADLPLRVASPIESPSAETTACVTSSLPSEDAISRKKPRLGWGDGLAKYEKEKVEVPDGSLRKEVALLSSGSAELTHSLGSNFAEKSPKTLPFSDCASPATPSSFACSSSSGLEDKPFSKGASMDGMICSSPGSSSQNLQKLLSSIEMMEIGSIANLGSSLVELFHSDDPSTVESCFGKSTLNKLLAYKGEISKKLETTESEIDSLENELKSLKSGNGGNVSHKKSCSVTHLVENVTYFKEQDGVSCVAPRPAPLVIVSSSDATVEKMPVCKGDMGVEDVDTKADEIDSPGTVTSKFNEPSRVVKTVASDLVVNGHCSEVTDVIVPDKMEGNFPVSRSFVDEHKTIGSDNECILAKSCTKESIYGDLMAQAGSRSSLCDQIFACNKEYASRAAEVIFKKLPAEMCKISSKSTKIVSCSETEKLVKEKFLMRRQFFKFKESALTLRFKALQQSWKEGLLHSVKKCRSRPQKKELSLRVSHSGHQKYRSSTRSRLVQQGACQNPTLNTEIAVRYSSKLLLNPQIKLYRNSLKMPAMILDKKEKMALRFISHNGLVEDPCAVEKERNMINPWTSAEREIFWEKLSLFGKDFKKISSFLDLKTTADCIQFYYKNHKSDSFKKNKNLELGKQVKSSAITYLVTSGKKWNPDVNATSLDILGVASVMAAQADYDIGNQQKCTRHLGMGRDVESKVSCSASTPSNKNNLDALQTEKETVAADVLAGICGSISSEALSSCITSAIDPSEDHRERKCYKVDSAVKLPSLSDVMQKTDNEEPCSDDSSEDVDSSNWTDEEKSIFMQAVSSYGKDFDMISRCIRSKSRDQCKVFFSKARKCLGLDLMHTSGDVGETPGSGNDASGSGTDTEDHCIVEICGAHGSDEFVSKSINGVSTSVNINHEESVSAVTVNMRTSSEFEESTVLQQSDEKCAEAVGNLISEISKEEDLPSPDSHSAYNLTNAAASLSQPVHDHKIEGSSENTEGGSKCCNEPDILRSESVSTVDENSAAVSEGRATAKLAFGGEEEGRNTNLHVQSILQCSVQNSTGFDSNLALEGSSLGLDPQILHPTVLKVEHVEKSCVESENSLAVGNSDPGVIGREQMLNQDMLSSTAVLQEVSDVHQKPMNRDDYAEHQNNLLHDSESKFPRSYPFNEQIFEDINRNINRTYFPVVQGLSKPDINCNSSYVSEGHYLQNCNSSKPHNPAELPFLPQNIDLGHDRQKKASCSGSASDSDVPRRKGDVKLFGQILSHAPSEQNSSSGSNGGGEENHISSSKSCDIGENVPLRSYGFWDGSRIQTGLSALPDSAILQAKYPAAFSGYSATSVKTEQQPLQALTNNGDRSLNGLVSAFPTKDGVVDYHSYRSRDGVKMRPFPVDIFSEMQRRNGFDGVSLSSLQQQGRVLVGMNVVGRGGILMGGSCTGVSDPVAAIKMHYAKAEQYVGQPGSTFTREDGSWRGGNGGDLGSRHQEKSCKCNDQRDENQPMAYSYEVVSTAEQKVPMRLSVSTSSAFLRSSSYICFLKPDKSKKKWFQKEESVDVISFLEQSPLDVPAQPPIEDDVKQTEPENEPSELAHLEAAESAVAEAQLAVVVEYPPSPISCRPEMSEETAAIVIQTAFRGYTARRALRALKALMRLKTLVQGQSVKRQVASTLKCMQTLTHLQSEIRARRIRMSEENQALQRQLRNKREKDLEKLKFAMDDDWNHSTQSKAQIEAKLLNKHEAAIRRERALAYAYSHQQTWKNSSKTATPTVMDPNNPHWGWSWLERWMAARPWESQSTTDQPDHISVTSVATRASVVDILQIYARRDQNPSTKLSPKSPTSQKSSQLPKYHSPSTPKALFSSSGRKKTNAANSRIGSWGRDEDIRSITSVKSKLSRRHTIAGSSFRDDESLASLPSVSSYMTPSKAVKNRSRLASSSRTEKKGTMEKGSASAGSAKKQLSFSAFPVKPRRQSSPPIVNTG 2154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31155807 31168964 - ClG42_05g0228000.10 Clacu05g2280 250027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 79 120 - -
Clacu05g2280 2154 SUPERFAMILY Homeodomain-like 758 820 IPR009057 -
Clacu05g2280 2154 Coils Coil 395 422 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 966 991 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 1640 1673 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 2091 2107 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 121 162 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 1 236 - -
Clacu05g2280 2154 Pfam Myb-like DNA-binding domain 991 1032 IPR001005 -
Clacu05g2280 2154 Pfam Myb-like DNA-binding domain 774 816 IPR001005 -
Clacu05g2280 2154 SUPERFAMILY Homeodomain-like 986 1038 IPR009057 -
Clacu05g2280 2154 Pfam IQ calmodulin-binding motif 1803 1821 IPR000048 GO:0005515(InterPro)
Clacu05g2280 2154 Gene3D - 936 1045 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 58 75 - -
Clacu05g2280 2154 Gene3D - 751 823 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 219 236 - -
Clacu05g2280 2154 Coils Coil 1863 1883 - -
Clacu05g2280 2154 ProSiteProfiles SANT domain profile. 987 1038 IPR017884 -
Clacu05g2280 2154 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1658 - -
Clacu05g2280 2154 CDD SANT 991 1030 IPR001005 -
Clacu05g2280 2154 ProSiteProfiles IQ motif profile. 1800 1828 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 2091 2154 - -
Clacu05g2280 2154 ProSiteProfiles SANT domain profile. 770 821 IPR017884 -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 2001 2050 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 8 46 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 1446 1473 - -
Clacu05g2280 2154 SMART sant 988 1036 IPR001005 -
Clacu05g2280 2154 SMART sant 771 819 IPR001005 -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 180 207 - -
Clacu05g2280 2154 MobiDBLite consensus disorder prediction 2001 2049 - -
Clacu05g2280 2154 ProSiteProfiles Myb-like domain profile. 984 1034 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2280 Clacu-Chr5:31155807 Clacu09g2069 Clacu-Chr9:35494288 3.40E-110 dispersed
Clacu07g0989 Clacu-Chr7:24327790 Clacu05g2280 Clacu-Chr5:31155807 6.70E-26 transposed
Clacu09g2083 Clacu-Chr9:35626732 Clacu05g2280 Clacu-Chr5:31155807 5.40E-234 transposed
Clacu10g2021 Clacu-Chr10:33660801 Clacu05g2280 Clacu-Chr5:31155807 7.20E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47756 PF00249 Myb_DNA-binding 2.90E-06 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2280 - - - 0.0