Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2291 ATGGCCAAAGACGACGCCACCGCCGCGCGACGGTTCTCCGGCAAGGACTACCACGACCCTCCGCCGGCGCCGCTGTTCGACGCGGCGGAGCTCAGCAAGTGGTCCTTTTACAGGGCCCTCATTGCCGAGTTCATTGCCACTCTTCTTTTTCTCTATGTCACCATATTGACTGTGATTGGCTACAGCAGCCAGACCGATACCAGTAAGCCCGGCGCCGACGCTTGCGATGGCGTCGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTTGTCTACTGCACTGCCGGCATTTCAGGTGGGCACATAAACCCGGCGGTGACGTTCGGGCTATTCTTGGCCCGTAAAGTGTCGTTGGTGCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTAGGAGCCATATGCGGGACGGGGCTAGTGAAAGCGTTCCAAAAGGCTTACTTCAACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCATGGCTACACCAAAGGCACCGGCTTGGGTGCTGAAATCGTTGGTACCTTTATCTTGGTTTACACCGTCTTCTCCGCCACTGATCCCAAGAGAAACGCCAGAGACTCCCATGTTCCTGTATTGGCTCCCCTCCCAATTGGGTTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATTACCGGCACAAGCATCAACCCTGCAAGAAGCTTCGGCCCTGCTGTTATCTTAAACAAGGATAAACCTTGGGATGAACATTGGATATTCTGGGTTGGGCCATTCGTCGGAGCCGCCATCGCAGCCTTCTACCATCAGTTCATTTTGAGGGCCGGCGCCGCCAAGGCTCTCGGCTCTTTCAGGAGCACCCCCTCCAATGTTCCAGTTCTGTTTCTTTTGGCCAACGAGTACTTGAATTCTGCTCAGAAGTCCTCCTGCTTCTCTCCTGTTGTTACTGCTGCTATTGCTGCGGAGCTTGCCTCTCCGAAGAAGAAGAACATTAATGTTGATGAAGAATAG 1002 55.29 MAKDDATAARRFSGKDYHDPPPAPLFDAAELSKWSFYRALIAEFIATLLFLYVTILTVIGYSSQTDTSKPGADACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGTGLVKAFQKAYFNKYGGGANQLAHGYTKGTGLGAEIVGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNKDKPWDEHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSTPSNVPVLFLLANEYLNSAQKSSCFSPVVTAAIAAELASPKKKNINVDEE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31293989 31302183 - ClG42_05g0229100.10 Clacu05g2291 250038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2291 333 CDD MIP 38 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g2291 333 NCBIfam MIP family channel protein 42 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g2291 333 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Clacu05g2291 333 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Clacu05g2291 333 FunFam Probable aquaporin PIP1-2 23 285 - -
Clacu05g2291 333 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Clacu05g2291 333 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Clacu05g2291 333 Pfam Major intrinsic protein 30 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g2291 333 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g2291 333 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g2291 333 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g2291 333 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g2291 333 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu05g2291 333 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0430 Clacu-Chr2:3878375 Clacu05g2291 Clacu-Chr5:31293989 1.90E-122 dispersed
Clacu04g0944 Clacu-Chr4:23681998 Clacu05g2291 Clacu-Chr5:31293989 1.30E-131 dispersed
Clacu04g0945 Clacu-Chr4:23687465 Clacu05g2291 Clacu-Chr5:31293989 1.20E-132 dispersed
Clacu04g0996 Clacu-Chr4:24122564 Clacu05g2291 Clacu-Chr5:31293989 2.50E-28 dispersed
Clacu05g2291 Clacu-Chr5:31293989 Clacu07g0403 Clacu-Chr7:4619390 2.40E-108 dispersed
Clacu10g2005 Clacu-Chr10:33544530 Clacu05g2291 Clacu-Chr5:31293989 9.50E-117 wgd
Clacu05g2291 Clacu-Chr5:31293989 Clacu08g0897 Clacu-Chr8:19070111 2.10E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2291 K09872 - csv:101204956 553.903