Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2310 ATGGGTTCGTCGGAGAAGGAGCTGAAAGATATAATGGTGAATCAATTGCCAGAGTCTGTGAGAGAGATTTCAGGGCTTCCCGAGTATCACGGCATCTGTAAGAAGATGTATGGGGACTTGATTCGAAGGGTCAAATTATTGAGCCCTCTGTTTGAGGAATTGAGAGATGGAGAAGATGAACTTGGATTAGATGTTCTTAAGAGCTTGGAGTTGCTTAAAATTGCTTTGGATTCTGCCATAGAGCTTCTTGGGTCGGTCAGCCGAGGAAGCAAGCTATTTCAGGCTTCGCAGTTGGAAAAGATTGTGCTTGAGTTTCATCATATGACAGAAGATATTGAAGCAGCACTCAGCAAGCTTCCCATTGACAAGCTCGGGATCTCAGACGAGGTTCGAGAACAGACTGAACTTGTTCATGCACAATTCAAACGAGCGAAAGAGAGAGTAAATGTAGCTGATGCACAGTTAGACAAGGATTTAGCCATATTACAAGAAGAAAAAGATCCTGACCCTGCAATATTGAAGAGAATTTCTGAAAAGCTGCATCTTCGGACTATAAACGATCTGAAGAAAGAGTCACTAGCGATCCATGAGCTGGTGATCTCGAGCGATGGAGACCCTCAGGGTGTTTTTGGAAAATTGTTGTCCGTTTTAAAGAAGCTGAAGGATTTTGTACAATCAGAAAACCCAGCAGTTGAAACTTCTCAAGAAGAAAAAGCTACCACCATTAAACACAGATCTCCTGTCATCCCGGACGATTTCAGATGCCCCATATCTCTTGAATTGATGAGGGATCCGGTCATCGTCTCCACCGGGCAGACTTATGAGAGATCTTGCATTCAGAAATGGCTGGATGCAGGGCACAAAACCTGTCCAAAATCTCAACAAGCTTTATCACATACAGCCTTAACACCAAATTACGTTTTGAAGAGTCTAATTGCTTTATGGTGTGAGAACAATGGCGTTGAACTGCCAAGGAAGCAAGGTAGCTGTAGAAACAAGAAACCCGGAAACAATGTTTCAGACTGTGATCGAGCGGCCATCGATGCCTTACTTGTAAAACTGGTAAATGGATCTCCAGAACAGAAAAGATCAGCTGCAGGTGAGCTCCGGCTACTAGCGAAGAGGAATTCGGACAACAGAATTTGTATTGCTGAGGCAGGAGCCATTCCGTTCCTTGTTGAACTATTATCGTCAAATGATACTAGGACCCAGGAGCATGCGGTTACAGCATTATTGAATCTTTCAATCAACGACAGTAACAAAAGAACAATTGTTGATTTACGAGCCATACCCGCTATAGTAGAAGTGTTGAAAAATGGCAGTATGGAGGCAAGGGAAAATGCAGCTGCAACCCTTTTCAGTTTATCCGTGATAGACGAGAACAAGGTTGCGATCGGAGCAGCCGGGGCAATTCCTGCTCTTATTAGTTTGCTTCGAGAAGGTACTCCGAGAGGAAAGAAGGACGCTGCCACTGCTATTTTCAATCTTTCAATCTATCAGGGAAACAAAGCTAGAGCAATAAGAGCAGGCATCGTGAATCCACTTATGGGATTTCTGAAAGATGCTGGAGGTGGAATGGTTGATGAAGCTCTAGCCATTCTAGCCATTCTTGCAACTCACCATGAAGGAAAGATGGGAATAGGGGAAGCCGAGCCGATGGCAATTCTGTTGGAGTTCATTAGAACCGGTTCTCCACGGAACCGGGAGAATGCTGCTGCCGTGTTGTGGTCGCTTTGCAGTACTGATTTCGAGCAGTTGAAGCTAGCTAGGGAACATGGGGCAGAAGAGGCATTAAAGGAAGTATCTGAGAATGGAACAGACAGAGCAAAGAGAAAAGCAGGAAGCATTTTAGAACTCTTTCAACGCTTCGATGGACCATCAGCTAATTTATAA 1893 44.27 MGSSEKELKDIMVNQLPESVREISGLPEYHGICKKMYGDLIRRVKLLSPLFEELRDGEDELGLDVLKSLELLKIALDSAIELLGSVSRGSKLFQASQLEKIVLEFHHMTEDIEAALSKLPIDKLGISDEVREQTELVHAQFKRAKERVNVADAQLDKDLAILQEEKDPDPAILKRISEKLHLRTINDLKKESLAIHELVISSDGDPQGVFGKLLSVLKKLKDFVQSENPAVETSQEEKATTIKHRSPVIPDDFRCPISLELMRDPVIVSTGQTYERSCIQKWLDAGHKTCPKSQQALSHTALTPNYVLKSLIALWCENNGVELPRKQGSCRNKKPGNNVSDCDRAAIDALLVKLVNGSPEQKRSAAGELRLLAKRNSDNRICIAEAGAIPFLVELLSSNDTRTQEHAVTALLNLSINDSNKRTIVDLRAIPAIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALISLLREGTPRGKKDAATAIFNLSIYQGNKARAIRAGIVNPLMGFLKDAGGGMVDEALAILAILATHHEGKMGIGEAEPMAILLEFIRTGSPRNRENAAAVLWSLCSTDFEQLKLAREHGAEEALKEVSENGTDRAKRKAGSILELFQRFDGPSANL 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31476280 31478905 + ClG42_05g0231000.10 Clacu05g2310 250057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2310 630 CDD RING-Ubox_PUB 250 302 IPR045210 -
Clacu05g2310 630 SUPERFAMILY ARM repeat 346 620 IPR016024 -
Clacu05g2310 630 PANTHER U BOX DOMAIN-CONTAINING 34 622 - -
Clacu05g2310 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 Gene3D - 12 122 IPR036537 GO:0007166(InterPro)
Clacu05g2310 630 SMART arm_5 376 416 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 SMART arm_5 499 539 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 SMART arm_5 458 498 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 SMART arm_5 417 457 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 SMART arm_5 540 580 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 Pfam U-box domain 249 319 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu05g2310 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 FunFam RING-type E3 ubiquitin transferase 332 625 - -
Clacu05g2310 630 SUPERFAMILY RING/U-box 247 323 - -
Clacu05g2310 630 Gene3D - 333 620 IPR011989 -
Clacu05g2310 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu05g2310 630 SMART Ubox_2 252 315 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu05g2310 630 FunFam RING-type E3 ubiquitin transferase 249 322 - -
Clacu05g2310 630 Pfam Armadillo/beta-catenin-like repeat 417 456 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515(InterPro)
Clacu05g2310 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 322 IPR013083 -
Clacu05g2310 630 FunFam RING-type E3 ubiquitin transferase 9 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0615 Clacu-Chr1:6458410 Clacu05g2310 Clacu-Chr5:31476280 1.20E-53 dispersed
Clacu01g2214 Clacu-Chr1:33404944 Clacu05g2310 Clacu-Chr5:31476280 4.10E-13 dispersed
Clacu03g0161 Clacu-Chr3:1727454 Clacu05g2310 Clacu-Chr5:31476280 1.90E-115 dispersed
Clacu03g0744 Clacu-Chr3:8247712 Clacu05g2310 Clacu-Chr5:31476280 1.70E-44 dispersed
Clacu05g2310 Clacu-Chr5:31476280 Clacu07g0636 Clacu-Chr7:10691058 8.40E-09 dispersed
Clacu05g2310 Clacu-Chr5:31476280 Clacu02g2083 Clacu-Chr2:34060589 7.30E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2310 K27628 - csv:101221065 1107.82