Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2320 ATGGTGGCCGGCAGAGGAATCTCTGGGTGCTCCAACATAAGGAGCATAGTCGTCCACGTCATCATCGGAAGGTGGTTCGTGGTGTTCGCTTCGCTCTTAATCATGGCGGCTGCCGGAGCAACGTACATGTTTGGCCTATATTCGAACGACATAAAATCTGTTTTGGGTTATGACCAAACAACGTTGAATTTGCTGAGTTTTTTCAAAGATTTGGGTGCAAACGTCGGTGTTTTGTCTGGACTGATTAACGAGGTTACGCCGCCATGGGTGGTTTTGTCCATCGGTGCTGTTTTGAATTTTTTTGGTTACTTCATGATTTGGCTGGCTGTTACTAAGCGGATCTCTACCCCCAAAGTTTGGCAAATGTGTCTCTATATTTGTATTGGAGCCAATTCTCAATCTTTTGCTAATACGGGTTCTCTTGTTACCTGTGTCAAAAACTTTCCTGAAAGTCGTGGCGTAGTTCTCGGTATCTTGAAGGGATACGTCGGACTGAGCGGCGCCATAATCACACAACTCTTCCATGCATTTTACGGCAACGACACCAAATCCTTAATTCTCCTCATCGGATGGCTCCCGGCGGCAATTTCCTTCGCATTTTTACGAACAATTCGTATTATGAAAGTTATCCGACAGCCAAACGAGCTTAAAGTCTTCTACAATTTCCTTTACATTTCTCTTGGCCTCGCCGGATTCCTAATGCTAATGATCATCGTAGAGAGCAAAACAGAGTTCACTCAAAGCGAATACGGTGGCAGCGCCGCTGTCGTCCTTCTCCTCCTCTTCCTCCCACTCGCCGTCGTCATCATTGAAGAATACAATCTCTGGAAACTCAAAACCGTCCTCATTAAATCCCCAAATCCCTCTGTTCAAATCGTAACAGAGAAACTCCCAAAAACCGAGCAACTCCATAAGACAGAGCATCCAAAACAACAACCAAAAGAACCATCTTGTTGGACAACAATTTTCAACCCACCAGCGCGCGGCGAGGATTTCACAATTCTCCAAGCTCTCTTCAGTGTCGACATGCTGATTCTATTCCTCTCTGCAATTTGCGGCGTCGGCGGAACATTAACGGCAATAGACAATTTGGGTCAAATCGGAATGTCTTTGGGATACCCAAAAAGAAGCATTAGCACATTTGTAACATTAGTCAGCATTTGGAATTACCTCGGCCGAGTTGCCTCTGGTTTCATCTCAGAAATAGTTTTGACAAAATACAAATTCCCTCGTCCTCTAATGCTCTCTCTGACCCTTCTTTTTTCCTGCATTGGCCATTTGATGATCGCATTTGATGTCCCAAATGGGCTTTATGTGGCTTCCATCGTAATTGGATTCTGCTTTGGAGCACAGTGGCCATTGATTTTCGCCATAATTTCAGAGCTTTTTGGGTTGAAATATTACTCCACACTATACAATTTTGGGGCAGTGGCAAGCCCAGTTGGGCTTTATGTTCTGAATGTGAAAGTGGCTGGGAATTTCTACGACAGAGAAGCAGAGAAGCAACTGAGAGCAAAAGGGATGATCAGAAAAGCAGGGGAAGAATTAAAGTGCTTTGGAGGGGAATGCTTCAAGCTTTCGTTCATTGTAATTACTGCAGTTACTTTGTTGGGTATGTTTGTTTCGTTGATTTTAGTGATTAGAACGAGGAGTTTTTACAAGAGTGATATTTATCAGAAGTTCCGAGATGAAGCTAAAACAGAGGTGGCCGGAAATGGATGTTTGGCGGCGGCCACAGCAACAGAAGAGACAAGAAAATGA 1761 44.24 MVAGRGISGCSNIRSIVVHVIIGRWFVVFASLLIMAAAGATYMFGLYSNDIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLAVTKRISTPKVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLFHAFYGNDTKSLILLIGWLPAAISFAFLRTIRIMKVIRQPNELKVFYNFLYISLGLAGFLMLMIIVESKTEFTQSEYGGSAAVVLLLLFLPLAVVIIEEYNLWKLKTVLIKSPNPSVQIVTEKLPKTEQLHKTEHPKQQPKEPSCWTTIFNPPARGEDFTILQALFSVDMLILFLSAICGVGGTLTAIDNLGQIGMSLGYPKRSISTFVTLVSIWNYLGRVASGFISEIVLTKYKFPRPLMLSLTLLFSCIGHLMIAFDVPNGLYVASIVIGFCFGAQWPLIFAIISELFGLKYYSTLYNFGAVASPVGLYVLNVKVAGNFYDREAEKQLRAKGMIRKAGEELKCFGGECFKLSFIVITAVTLLGMFVSLILVIRTRSFYKSDIYQKFRDEAKTEVAGNGCLAAATATEETRK 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31550671 31552905 + ClG42_05g0232000.10 Clacu05g2320 250067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2320 586 CDD MFS_Mch1p_like 23 539 - -
Clacu05g2320 586 SUPERFAMILY MFS general substrate transporter 23 551 IPR036259 -
Clacu05g2320 586 Gene3D MFS general substrate transporter like domains 332 554 IPR036259 -
Clacu05g2320 586 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 24 561 - GO:0016020(PANTHER)
Clacu05g2320 586 FunFam Nodulin family protein 334 555 - -
Clacu05g2320 586 Pfam Nodulin-like 24 269 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0265 Clacu-Chr3:3018251 Clacu05g2320 Clacu-Chr5:31550671 7.60E-142 dispersed
Clacu03g0266 Clacu-Chr3:3026229 Clacu05g2320 Clacu-Chr5:31550671 1.50E-193 dispersed
Clacu05g2320 Clacu-Chr5:31550671 Clacu05g2322 Clacu-Chr5:31572034 6.20E-208 dispersed
Clacu05g2320 Clacu-Chr5:31550671 Clacu05g2321 Clacu-Chr5:31561976 6.70E-287 tandem
Clacu10g1973 Clacu-Chr10:33252910 Clacu05g2320 Clacu-Chr5:31550671 7.60E-206 wgd
Clacu05g2320 Clacu-Chr5:31550671 Clacu08g0930 Clacu-Chr8:19443626 3.50E-219 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2320 - - - 0.0