Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2322 ATGGAGGGATTGGGCATGAAATCCTTTACACTAAAACTAATCAAAGGGTCATGGTTCATGATGTTTGGGTCGTTCCTAATCATGTCGATGGCAGGCATCCCCTACATGTTCGGCTTGTATTCCAGCACCATAAAATCCGTCTTAGGGTACGACCAAACAACCCTAAACTTCATAAGTTTCTTCAAAGACGTCGGTACAACGGTCGGCGTCGTAGCTGGGTTAATCAACGAAGTAACCCCGCCATGGTCCATCCTAGCCATGGGAGCTCTCCTCAACTTCTTCGGCTACTTCATGATCTGGTTATCCGTCTCCCAGAAAATCCCCACTCACGTCTGGTTAATGTGTCTCTACATCTGTGTCGGCGCCAACGCAACGACGTTCGCCAACACGGGCGCGTTAGTTACGTGCGTAAAGAACTACCCGCAACGGCGTGGCGTCGTGATCGGGATTTTGAAAGGGTATATGGGATTGAGTGGGGCAATTGTGACGCAATTGTATCATGCTATATATGGGAAAGATGAGAAGTCGTTGATATTGTTGTTGGGGTGGTTGCCTGCGGTGGTGTCGTTCGTGTTTTTGCCGACGGTACGGCGGATGAAGGTGGAGCATGAGGAGGATGAGTTGAAGGTTTTTTATAGGTTTTTGTATATATCGTTGGGATTGGCAGGGTTTTTGATGATGATGATAATTTTGCAACAAAAGTTTAGTTTTGATAGAGGGGAATATGGAGGGAGTGCGGCGGTGGTTACTATTTTGTTGCTTTTTCCTATCGTCGTGGTTGTTGCTCAAGAGTTTAAGGCGTGGCGGCGGTTGAATAAGCCGGCGGTTCTTGAAAATGGCCTTTCTCCCTTGCCGATGTCACCACCATTGAAGAACACAACACCAATGTCACTCCTCCCGAAGAAACCAAAACCCCAACAACAACCCATCAAAGTCGAGTGGTGGAAAAACGTATTTAATCCCCCACCAAGAGGAGACGATTGGACAATCCTCCAAGCTTTGTTCAGCTTCGACATGTTCCTCCTCTTCCTTGCCACCGCCTGCGGCGTCGGCGGCACCCTCACCGCCATCGACAACCTCGGCCAAATCGGTCAATCCCAAGATTACCCCAAAAAAAGCATCAGCACATTCGTTTCCCTCGTCAGCATCTGGAATTACCTCGGCCGAGTCATGGCCGGATTCCTCTCCGAACATTTACTCATCAAATACAAATTCCCCCGTCCTTTAATGCTTACGATCGTTCTCCTTCTTTCCTGCATTGCCCATCTTCTAATCGCCTTCAATCCCGCCGGCGGCCTTTACATCGCCTCTGTTTTGACCGGATTCTGTTACGGCGCTCAATGGCCTCTGCTTTTCGCCATTGTTTCAGAGATTTTTGGGCTGAAATATTACGCGACTTTGTATAATTTCGGGTCGGTAGCTAGCCCAGTAGGGCTTTATGTGTTGAATGTGAATGTGGCTGGGTATTTGTATGATAAGGAAGCGAAGAAGCAGCTGGCGGTGGCGGGGAGGATTAGGAAAACAGGGGAGGAGTTGATTTGTAATGGGACGGTGTGTTTTAAGCTTTCTTTTGTGATTATTACGGCGGTGAGTTTGTTTGGGGCTTTGGTTTCCTTGGTTTTAGTGTTGAGGACCAAGAAGTTTTATAAGAGTGATATTTATAGGAAGTTTAGAGAGGCAGAGGAGGCCGCCGCCGCGGCGGAGAAAGAGGAGGAGGATGGTGGTGATGGAGTTAGGAACGGCGGCGGTTTGGTGGAGGAGTCGAAACAGGGGCTTAGGCAATGA 1785 48.63 MEGLGMKSFTLKLIKGSWFMMFGSFLIMSMAGIPYMFGLYSSTIKSVLGYDQTTLNFISFFKDVGTTVGVVAGLINEVTPPWSILAMGALLNFFGYFMIWLSVSQKIPTHVWLMCLYICVGANATTFANTGALVTCVKNYPQRRGVVIGILKGYMGLSGAIVTQLYHAIYGKDEKSLILLLGWLPAVVSFVFLPTVRRMKVEHEEDELKVFYRFLYISLGLAGFLMMMIILQQKFSFDRGEYGGSAAVVTILLLFPIVVVVAQEFKAWRRLNKPAVLENGLSPLPMSPPLKNTTPMSLLPKKPKPQQQPIKVEWWKNVFNPPPRGDDWTILQALFSFDMFLLFLATACGVGGTLTAIDNLGQIGQSQDYPKKSISTFVSLVSIWNYLGRVMAGFLSEHLLIKYKFPRPLMLTIVLLLSCIAHLLIAFNPAGGLYIASVLTGFCYGAQWPLLFAIVSEIFGLKYYATLYNFGSVASPVGLYVLNVNVAGYLYDKEAKKQLAVAGRIRKTGEELICNGTVCFKLSFVIITAVSLFGALVSLVLVLRTKKFYKSDIYRKFREAEEAAAAAEKEEEDGGDGVRNGGGLVEESKQGLRQ 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31572034 31573968 + ClG42_05g0232200.10 Clacu05g2322 250069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2322 594 SUPERFAMILY MFS general substrate transporter 12 203 IPR036259 -
Clacu05g2322 594 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 17 558 - GO:0016020(PANTHER)
Clacu05g2322 594 Pfam Nodulin-like 18 261 IPR010658 -
Clacu05g2322 594 CDD MFS_Mch1p_like 18 535 - -
Clacu05g2322 594 Gene3D MFS general substrate transporter like domains 328 550 IPR036259 -
Clacu05g2322 594 SUPERFAMILY MFS general substrate transporter 247 549 IPR036259 -
Clacu05g2322 594 Pfam Major Facilitator Superfamily 341 547 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu05g2322 594 Coils Coil 550 570 - -
Clacu05g2322 594 MobiDBLite consensus disorder prediction 566 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2320 Clacu-Chr5:31550671 Clacu05g2322 Clacu-Chr5:31572034 6.20E-208 dispersed
Clacu05g2322 Clacu-Chr5:31572034 Clacu08g0930 Clacu-Chr8:19443626 3.00E-218 dispersed
Clacu05g2321 Clacu-Chr5:31561976 Clacu05g2322 Clacu-Chr5:31572034 3.60E-181 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2322 - - - 0.0