Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2323 ATGGGCTGCGGCTGCGCCGCCCTTTCCAATTCAGCCGGCGGCTCCGGCATCCACCACTCACGAGCCCCATTTGAAAACAGAGAAAAGATATCACAGAACAAAGCTGTCAGAAACATCCTCGAGTTCCTCATTGTACCTTTGAGGATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGCTTCAATCTTTGGTGTTGCTTCTGGTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTGAATGCATCTGTATGGAGAAGACAAATGCTGTCCGTCGAATCAAAGGATCAAACTTTCTCTTGTCTCACCGGAAACCCCATCGATGATTGCTGGCGGTGCGACCCGAATTGGGCGGCAAACCGACAGCGACTGGCCGACTGCGGTATCGGGTTCGGCCGGGATGCCATGGGTGGCAAAGGCGGAAAGATCTACATCGTTACCGACTCGTCGGATTTGGATCCGGCGAACCCTACTCCGGGGACTCTCCGGCACGCTGTGATCCAATTCGAACCGCTGTGGATCATCTTCTCCGCCGACATGACTATCAAGCTGAAATACGAGCTTATCATTAACAGTTTCAAAACGATCGACGGCCGTGGAGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATTCAATACGTGTCCAATGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGATCGACCCCAACTCACGTGGGGCATAGAGGGCTATCAGACGGAGATGGGATCTCAATTTTTAGCTCAAGAAAGATATGGATCGATCATTGCTCATTGTCATACTGCACAGATGGGCTAATAGACGCAATAATGGGATCAACAGGAATTACAATATCAAATAGCTACTTCTCGCACCATGATGAAGTGATGTTGTTAGGGCACGACGATCGGTATGTGCAAGACTCGGGGATGCAAGTCACCATTGCCTTCAACCACTTTGGCGAGGCATTAGTCCAACGCATGCCCCGTTGTAGACATGGCTACATTCACGTCGTCAACAATGACTTCACTGCTTGGGAAATGTATGCCATTGGAGGTAGTGCCCAACCCACTATTAACAGCCAAGGCAATCGCTACACCGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGACATTTTGGTGAACGGCGCGTTTTTTGTACCTTCCGGTGCCGGACTTAGCACCCAGTACGGTAAGGCTTCCAGCGTGGAGCCTAAGTCTGTGGCTCTCATCAATCAACTCACTATGAACGCCGGTGTTTTGGGCGCCCCCAGGTATAATGCTGGTCAAGGAATTGTATATCCGGGATTCAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGTAATGGTAATGATGATTACTACGGCATGATATTTAAAGCTGGTGGTTATAGGAGACTGAAGGAAATATTTGGGCTTTTGCTTTGTGGACCTCTTGCAAGATTCAGTTTCTGA 1623 49.85 MGCGCAALSNSAGGSGIHHSRAPFENREKISQNKAVRNILEFLIVPLRMFPVLSILLIWMSASIFGVASGSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSVESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNAGQGIVYPGFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAGGYRRLKEIFGLLLCGPLARFSF 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31579650 31592120 - ClG42_05g0232300.10 Clacu05g2323 250070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2323 540 PANTHER PECTATE LYASE 18-RELATED 65 461 IPR045032 GO:0030570(InterPro)
Clacu05g2323 540 SUPERFAMILY Pectin lyase-like 109 437 IPR011050 -
Clacu05g2323 540 PRINTS Pollen allergen Amb family signature 265 286 IPR018082 -
Clacu05g2323 540 PRINTS Pollen allergen Amb family signature 141 158 IPR018082 -
Clacu05g2323 540 PRINTS Pollen allergen Amb family signature 165 190 IPR018082 -
Clacu05g2323 540 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Clacu05g2323 540 PRINTS Pollen allergen Amb family signature 201 217 IPR018082 -
Clacu05g2323 540 PRINTS Pollen allergen Amb family signature 438 461 IPR018082 -
Clacu05g2323 540 PRINTS Pollen allergen Amb family signature 409 433 IPR018082 -
Clacu05g2323 540 PRINTS Pollen allergen Amb family signature 367 386 IPR018082 -
Clacu05g2323 540 Pfam Pectate lyase 201 382 IPR002022 -
Clacu05g2323 540 Gene3D - 118 460 IPR012334 -
Clacu05g2323 540 SMART amb_all 193 390 IPR002022 -
Clacu05g2323 540 FunFam Pectate lyase 118 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0991 Clacu-Chr4:24080645 Clacu05g2323 Clacu-Chr5:31579650 5.30E-181 dispersed
Clacu05g0400 Clacu-Chr5:3446645 Clacu05g2323 Clacu-Chr5:31579650 2.60E-153 dispersed
Clacu05g2323 Clacu-Chr5:31579650 Clacu06g0789 Clacu-Chr6:9323202 5.60E-155 dispersed
Clacu04g0900 Clacu-Chr4:23333551 Clacu05g2323 Clacu-Chr5:31579650 1.50E-42 transposed
Clacu05g2323 Clacu-Chr5:31579650 Clacu08g0933 Clacu-Chr8:19464572 2.00E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2323 K01728 - csv:101205739 912.138