Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2340 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAAAGCAACGCTTCTAATGGCGGCAATGTTCAGAGATCCAAGAGCTTTGCCTTTCGAGCTCCTCAGGAGAATTTTACAATCCAGGATTTTGAATTGGGAAAGATTTATGGGGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTTTATACTGCAGAAGTGGTCGATGCCCTCGAATACATACACAACATGGGATTGATACACCGTGATATCAAGCCTGAAAACTTGCTACTTACTTCTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTTGATAGTCGAATTACCGTTCTCCCGAATGCAGCATCAGATGATAAAGCATGTACATTTGTGGGAACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTCGGAAATGACCTTTGGGCGCTCGGGTGCACCTTGTACCAGATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTCCAAAAAATTGTAGCACGAGATATAAAATTCCCCAGCTATTTTTCTGAGCAAGCAAGGGACCTCATCGACCACCTATTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCAGAGGGTTATACTTCTCTCAAGAATCATCCCTTCTTTGAGGGGGTTGATTGGAACAACATAAGAGCACAAACTCCTCCCAGGCTTGCTTTAGAAGCAGGGAGTCATTCGAATGAGAACGATGATGGCTCTGAGTCCTCTTGGAATCCTTCACATGTTGGAGACGGTGCATCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCTGAAGGCTCACATCATATTACTCGACTTGCATCGATTGACTCCTTTGATTCAAAATGGCAACAATTCCTTGAGCCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAACTTCAGAAGCTAACAAGCAAAAAAGTTCAACTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATTATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCAAAGAAGATTGCTTCTTTTGAGGATGCGAAACAGCGAGCATGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA 1470 42.31 MLAMEKDFDAKLMIQSNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYTAEVVDALEYIHNMGLIHRDIKPENLLLTSDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYTSLKNHPFFEGVDWNNIRAQTPPRLALEAGSHSNENDDGSESSWNPSHVGDGASRQNDGNAGSASTSEGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNR 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31786955 31791966 + ClG42_05g0234000.10 Clacu05g2340 250087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2340 489 Pfam PH domain 386 488 IPR033931 -
Clacu05g2340 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2340 489 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Clacu05g2340 489 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2340 489 MobiDBLite consensus disorder prediction 330 372 - -
Clacu05g2340 489 FunFam 3-phosphoinositide-dependent protein kinase 2-like 128 326 - -
Clacu05g2340 489 SMART serkin_6 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2340 489 MobiDBLite consensus disorder prediction 338 372 - -
Clacu05g2340 489 FunFam 3-phosphoinositide-dependent protein kinase 1 359 489 - -
Clacu05g2340 489 FunFam 3-phosphoinositide-dependent protein kinase 2-like 42 127 - -
Clacu05g2340 489 SUPERFAMILY PH domain-like 305 488 - -
Clacu05g2340 489 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Clacu05g2340 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 325 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Clacu05g2340 489 CDD STKc_PDK1 42 311 IPR039046 GO:0004674(InterPro)
Clacu05g2340 489 Coils Coil 469 489 - -
Clacu05g2340 489 SUPERFAMILY Protein kinase-like (PK-like) 41 363 IPR011009 -
Clacu05g2340 489 Pfam Protein kinase domain 45 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2340 489 Gene3D - 357 489 IPR011993 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2340 Clacu-Chr5:31786955 Clacu06g1767 Clacu-Chr6:28215011 1.30E-54 dispersed
Clacu06g1633 Clacu-Chr6:27109630 Clacu05g2340 Clacu-Chr5:31786955 2.60E-07 dispersed
Clacu05g2340 Clacu-Chr5:31786955 Clacu02g1101 Clacu-Chr2:20704663 2.10E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73593 PF00069 Pkinase 1.30E-65 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2340 K06276 - csv:101212874 941.414