Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu05g2358 | ATGGAACAGTATGAGAAAGTTGAGAAGATTGGAGAAGGAACTTATGGTGTAGTTTACAAGGCACGCGATCGTGTCACAAATGAGACTATTGCGTTGAAGAAGATCCGTTTGGAGCAAGAAGATGAGGGAGTGCCAAGCACAGCCATTCGCGAAATTTCACTGTTGAAGGAAATGCAACATGGCAACATTGTAAGGTTACAAGATGTAGTGCATAGCGAGAAGCGGCTGTATCTTGTTTTTGAGTATCTGGATTTGGATTTGAAGAAGCATATGGACTCCTCTCCTGAATTTGCAAAGGATCCACGCCAAGTAAAAATGTTTCTTTATCAAATTCTTCGTGGCATTGCATACTGTCATTCTCATAGAGTTCTTCACCGAGATCTAAAACCCCAAAATCTACTGATTGATCGTCGTACCAATGCCCTGAAGCTTGCTGATTTTGGACTGGCAAGAGCATTTGGTATTCCTGTTAGAACATTCACGCATGAGGTGGTGACCCTTTGGTACCGAGCACCAGAAATATTACTTGGTTCCCGACATTATTCCACCCCCGTGGATGTGTGGTCAGTGGGTTGTATATTTGCTGAGATGGTTAATCAGCGGCCATTGTTCCCTGGAGACTCTGAGATTGATGAACTGTTTAAGATATTTAGAGTTCTGGGAACTCCAAATGAAGATACGTGGCCTGGTGTTACATCTTTGCCTGATTTTAAATCTGCTTTCCCCAAGTGGCCTCCCAAGGACCTGGCTTCTGTAGTTCCTAATCTTGAAGCCGCTGGCATTGATCTTCTCTCTAAAATGCTTTGCTTGGATCCCACCAAAAGAGTCACTGCCAGGAGTGCCCTCGAGCATGAATACTTCAAAGATGTTGGGTTTGTTCCCTGA | 885 | 43.95 | MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFAKDPRQVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRVLGTPNEDTWPGVTSLPDFKSAFPKWPPKDLASVVPNLEAAGIDLLSKMLCLDPTKRVTARSALEHEYFKDVGFVP | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 31982637 | 31987393 | + | ClG42_05g0235800.10 | Clacu05g2358 | 250105 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu05g2358 | 294 | Pfam | Protein kinase domain | 4 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu05g2358 | 294 | FunFam | Cell division control protein 2 homolog | 86 | 292 | - | - | |
Clacu05g2358 | 294 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 123 | 135 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu05g2358 | 294 | ProSiteProfiles | Protein kinase domain profile. | 4 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu05g2358 | 294 | PANTHER | CELL DIVISION PROTEIN KINASE | 3 | 287 | IPR050108 | GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)|GO:0051445(PANTHER) | |
Clacu05g2358 | 294 | ProSitePatterns | Protein kinases ATP-binding region signature. | 10 | 33 | IPR017441 | GO:0005524(InterPro) | |
Clacu05g2358 | 294 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 84 | - | - | |
Clacu05g2358 | 294 | SMART | serkin_6 | 4 | 287 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu05g2358 | 294 | Gene3D | Transferase(Phosphotransferase) domain 1 | 86 | 292 | - | - | |
Clacu05g2358 | 294 | FunFam | Cell division control protein 2 | 1 | 84 | - | - | |
Clacu05g2358 | 294 | CDD | STKc_CDK1_CdkB_like | 4 | 287 | - | - | |
Clacu05g2358 | 294 | SUPERFAMILY | Protein kinase-like (PK-like) | 1 | 290 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1809 | Clacu-Chr1:30242546 | Clacu05g2358 | Clacu-Chr5:31982637 | 7.40E-35 | dispersed | |
Clacu05g2358 | Clacu-Chr5:31982637 | Clacu11g2083 | Clacu-Chr11:31652544 | 8.00E-95 | dispersed | |
Clacu05g2358 | Clacu-Chr5:31982637 | Clacu02g1673 | Clacu-Chr2:30168315 | 3.20E-59 | transposed | |
Clacu05g2358 | Clacu-Chr5:31982637 | Clacu03g1683 | Clacu-Chr3:30590190 | 3.20E-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73594 | PF00069 | Pkinase | 1.00E-80 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu05g2358 | K02206 | - | csv:101217311 | 590.497 |