Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2376 ATGTCTTCTCTAATTTCAAGGCTTTTATTTCTCAATTTCTGCTTCTCTATACTCTTTTTCAGCTCAAATTCACAAGATAATGACTCTCAAAAGACATATATTGTTTATATGGGAAGTCATCCAAAAGGGAAGGTTTCAACTTCATCTCACCATATAAGATTGCTAAAAGAAACCATTGGCAGTACTTTTCCTCCACATTCTTTACTCCATAGCTACAAGAGAAGCTTCAATGGATTTGTGGCGAAGCTGACTGAAGCTGAAGCAAAAAAGGTTTCAGAAATGGAAGGGGTAATATCAGTTTTCCCAAATGGGAAAAAACAACTCCACACAACAAGATCTTGGGACTTCATGGGTTTCTCCGAACAAGTGAAGAGAGTTCCGGCGGTGGAAAGCAACGTCATTGTCGGAGTATTCGACAGCGGAATTTGGCCGGAATCTCCTAGTTTTCACCACACAGGATACGGTCCGCCGCCACCCAAGTGGAAGGGCAGTTGTGAAGTCTCCGCCAATTTCTCTTGCAACAATAAAATCATCGGAGCTCGTTCATATCGTAGTGACGGTAAACATCCAGAAGGTGACATCAAAGGTCCAAGAGATTCGGATGGCCACGGGACTCACACAGCATCAATTGTAGCTGGAGGGTTGGTTCGACAAGCGAGCATGTTGGGACTCGCCCTTGGCACAATAAGGGGTGGAGTCCCATCAGCACGCATTGCCGCATACAAAGTATGTTGGTCTGATGGCTGCACCGACGCTGACATTCTCGCCGCATTTGATGATGCCATTGCTGACGGTGTCGATATCATCTCCGGTTCTCTTGGAGGATCAAGGGTCAAAGATTACTTCAACGACTCCATAGCCATTGGATCCTTCCATGCAATGAAGAAGGGAATTCTTTCGTCATTGGCCGTTGGAAATAACGGCCCCGATTTTACAAGCATTGTGAACTTCTCTCCGTGGTCGTTGTCGGTGGCGGCTACCACCACTGATCGAAAATTCGAAACTAAAATTAAGCTTGGAGATGGAAGAGAATTCAATGGAGTCAGCATCAATACATTTGATATAAATGGAAAACAAATTCCATTGGTTTACGCCGGAGATATTCCTAAAGCTCCCTTTGACAGCTCCGTGTCAAGGATGTGCTTTGAGAATACAGTAGACTTGGAGTTGGTAAAGGGTAAAATTGTAGTATGCGATTCATTAGCCGTTCCAGAAGGAGTTGTGGCCGTAAAAGGTGCGGTGGGTATTATAATGCAAGACGATTCTTCACAAGATGATACCAACTCTTTTCCATTGCCTGCTTCTCATCTTGGCCCAAAGCCTGGTGCTCTCATTCTCTCTTATATCAACTCAACCAACAGCCTTCCAACAGCAACTATAATGAAGAGCACAGAAAGGAAACGTAAAAGAGCTCCTTTTGTTGCATCTTTTTCTTCAAGAGGTCCAAACCCAATAACCCCCAACATTCTCAAGCCGGATTTATGTGGTCCAGGAGTGGAAATTCTTGCAGCTTGGCCTGCAACGGCTTCACCTTCGGGAGCTGAAGAAGATAGTAGAAGAGTTGTTTATAACATCCTTTCCGGAACTTCAATGGCTTGCCCACATGTCACTGCAGCAGCTGCTTATGTTAAGTCCTTTCATCCTACTTGGTCTCCTGCTGCCCTTAAATCTGCCCTTATCACTACAGCATTTCCAATGAGCCTTAAACGTAATCCAGACAGAGAGTTTGGACATGGTGCCGGACACATAAATCCACTAGGCGCAGTGCATCCTGGATTAATCTACAATGCTTCTGAGATTGACTATGTAAAGTTTTTGTGCGGCCAAGGTTATACCACCGAGTTGCTCCAACGAGTCTCGGAAGACAACAACACTTGTCTTTCGAACAATTCCGACACAGTATTCGACCTTAACTATCCTTCCTTTGCTCTTTCCACAAATATCTCGAAACCAATTAACCAAGTTTACAAAAGGAGTGTCACCAATGTTGGATCAAAAAATGCAACATATAAAGCCACCATAATTAATCCATGGAATAATCTTGAGATCAAAGTAAAGCCTTTTATTCTTTCATTCAAGAATTTGGGAGAGGAGCAAAGCTTTGAGCTTACAATTAAAGGAAGAATTAGTAAAAATATTCAATCAGCTTCTTTGGTATGGGATGATGGGAAACACAAAGTGAGGAGTCCAATAACAGTATTTGATGCTAATATTCACTCTTCTTAA 2226 43.04 MSSLISRLLFLNFCFSILFFSSNSQDNDSQKTYIVYMGSHPKGKVSTSSHHIRLLKETIGSTFPPHSLLHSYKRSFNGFVAKLTEAEAKKVSEMEGVISVFPNGKKQLHTTRSWDFMGFSEQVKRVPAVESNVIVGVFDSGIWPESPSFHHTGYGPPPPKWKGSCEVSANFSCNNKIIGARSYRSDGKHPEGDIKGPRDSDGHGTHTASIVAGGLVRQASMLGLALGTIRGGVPSARIAAYKVCWSDGCTDADILAAFDDAIADGVDIISGSLGGSRVKDYFNDSIAIGSFHAMKKGILSSLAVGNNGPDFTSIVNFSPWSLSVAATTTDRKFETKIKLGDGREFNGVSINTFDINGKQIPLVYAGDIPKAPFDSSVSRMCFENTVDLELVKGKIVVCDSLAVPEGVVAVKGAVGIIMQDDSSQDDTNSFPLPASHLGPKPGALILSYINSTNSLPTATIMKSTERKRKRAPFVASFSSRGPNPITPNILKPDLCGPGVEILAAWPATASPSGAEEDSRRVVYNILSGTSMACPHVTAAAAYVKSFHPTWSPAALKSALITTAFPMSLKRNPDREFGHGAGHINPLGAVHPGLIYNASEIDYVKFLCGQGYTTELLQRVSEDNNTCLSNNSDTVFDLNYPSFALSTNISKPINQVYKRSVTNVGSKNATYKATIINPWNNLEIKVKPFILSFKNLGEEQSFELTIKGRISKNIQSASLVWDDGKHKVRSPITVFDANIHSS 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32108200 32114957 + ClG42_05g0237600.10 Clacu05g2376 250123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2376 741 ProSitePatterns Serine proteases, subtilase family, serine active site. 528 538 IPR023828 -
Clacu05g2376 741 MobiDBLite consensus disorder prediction 182 202 - -
Clacu05g2376 741 Gene3D - 606 735 - -
Clacu05g2376 741 MobiDBLite consensus disorder prediction 182 207 - -
Clacu05g2376 741 Pfam Peptidase inhibitor I9 32 109 IPR010259 -
Clacu05g2376 741 SUPERFAMILY Subtilisin-like 108 593 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu05g2376 741 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 731 IPR045051 -
Clacu05g2376 741 CDD PA_subtilisin_like 337 460 - -
Clacu05g2376 741 Pfam Fibronectin type-III domain 636 733 IPR041469 -
Clacu05g2376 741 Pfam Subtilase family 131 579 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Clacu05g2376 741 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 109 IPR037045 -
Clacu05g2376 741 ProSiteProfiles Serine proteases, subtilase domain profile. 113 589 - -
Clacu05g2376 741 CDD Peptidases_S8_3 106 563 IPR034197 -
Clacu05g2376 741 FunFam Subtilisin-like protease SBT5.3 21 109 - -
Clacu05g2376 741 Gene3D - 330 467 - -
Clacu05g2376 741 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Clacu05g2376 741 PRINTS Subtilisin serine protease family (S8) signature 527 543 IPR015500 -
Clacu05g2376 741 PRINTS Subtilisin serine protease family (S8) signature 199 212 IPR015500 -
Clacu05g2376 741 FunFam Subtilisin-like protease SBT1.5 132 351 - -
Clacu05g2376 741 Gene3D Peptidase S8/S53 domain 132 602 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0097 Clacu-Chr1:906500 Clacu05g2376 Clacu-Chr5:32108200 1.80E-301 dispersed
Clacu05g2376 Clacu-Chr5:32108200 Clacu07g0358 Clacu-Chr7:4132170 3.30E-270 dispersed
Clacu05g2376 Clacu-Chr5:32108200 Clacu04g1044 Clacu-Chr4:24698111 8.50E-162 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2376 - - - 0.0