Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2379 ATGGGGGTGCCTGCAACTGCAACTTTGGGGGATGATTTTCTGAGAGAAAGAGCGGCTAAGATGAGAGAATCACTGCAAAAGAGCCAAACTATTACTGATAACGTTGTCACCATTCTCGGTTCCTTTGACCACCGTCTTTCAGCTCTCGAAACCGCCATGCGCCCTACTCAGATCAGAACCAATTCTATTCGTAAAGCTCACGAGAACATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTTAGAGGGCCACATGAGGATTTGGAAAGTTATCTCGGGGCTATTGGTCAGTTAAGAAACATTATCAAATTCTTTAGTAGCCATAAAGGTTTTAAGAGTAGCGAGGTAGTGCTTAACCAGGCAAATACGCTGCTTGCAAAAGCCATCTCAAAGCTGGAAGATGAGTTCAGACAGCTATTATCTTCCTACAGCAAACCTGTGGAGCCCGAGCGTCTTTTCGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCATGATTCAGGTGGAAAGAATCACTCCTCAAATCCACATTCTGCACATCATGATAATAGCTTAGAGACTGCTGTCTACACACCTCCCTCTCTCATACCACCACGTGTTCTACCACTGCTGCATGATTTATCACAGCAAATGGTTCAAGCTGGTCATCAACAACAAATTTTAAAAATCTACAGGGATACCCGTTCAGTCGTTCTGGAAGAAAGCCTACGGAAATTAGGAGTTGAAAAACTTAGCAAAGATGATGTCCAGAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAACTGGATTCATTTTATGCGTATTGCAGTTAAACTGCTATTTGCTGGTGAACGAAAAGTTTGCGATCAAATATTTGAAGGCTTTGAATCACTTAGAGACCAATCATTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGCTATTCAGTTTCGGGGAGGCGATTGCAAAAAGCAAGAGGTCACCAGAAAAGTTGTTTGTACTTTTGGACATGTATGAAATTATGCGAGAGCTTCACTCCGAGATAGAGACAATTTTTAAGGGTAAAGCATGCAATGAGATCAAGGAATCTGCATCGGGTTTGACCAAACGGCTTGCTCAGACAGCTAAGGATACATTTGGTGATTTTGAGGAAGCTGTTGAAAAAGATGCCACAAAAACTGCGGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTATGTCAAATTTCTTTTTGACTATCAAGCAACCTTGAAGCAACTTTTTCAAGAATTTGAAGATAGTGGTCAAACGAATTCGGAATTGGCCACCGTCACAATGCAAATAATGCAGGCTCTTCAATCTAATTTGGATGGAAAATCTAAGCATTACAGAGACCCTGCTTTGACTCACTTATTCCTCATGAACAACATTCACTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGGTCGTACAACAACATGCAAATCAGTATAAAAGGAATGCTTGGTCAAAGATTCTGCAATGTCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCTGGTATAGATGGAGGAAATAGTAGCGGAGTTTCTAAGGCGCTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCCGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGTTTTGGGCCACTGATTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAGCCAGAGGATCTCGAAAGGATGCTCGGAGAATTTTTCGAAGGGAAGAACTTGAGTGAACCTAAGCGTCATTGGTCCAAGTTGCTCCCTGTTTCTGGAGGTCCAAAATCTGAGGGTTTGTACATATTATTTGTAATAGGCTCACGCTCGATGTCCTTGAAGAGGAATCCTGTCTTGCGAATCAAAGCCAAAAAAGATGACACGCTGCGCGCCATTGAAGACTACCAAAATGAAGTTGTGGACGCAAAGGCTTCCGGCTTTGCTTCGCTGCCGAGAAAATTGGACCATTCTCGAAGAATCAAACTCGCTCCGGTAATCATCAACTTCTTTCTTCTTCGTCTCACTCATCTGCATATTTGTTTAATCATTCTCTTCTCTTTACTTTATCTGGAACAATCTGGAAATTCCTTCTATACTAGGCTTCCTTCCTTACTGTTCCTAGAAATGCCGGGAGATGGTGGAATCACTGCGGATCCAACCATCGAAGCCTGCAGCAAGGAGGCAAGCGACTCCAAATTCGCGAAGCGTTTTGCCGACGATATCATGCCTCACGTCCTCAATCTGTATGGATCTTCTGCAACGCCTCGGGATTTTGAAATCTACGCTCCCGATGCTTCGTTCGAGGATCCATTAACGAGAGCTCACGGAGTGAAGGAAATCAAATCGGCATTTTATTCTTTGTCCAAGGTCTTTAGTGAATCCAGAATTGTGGAATACAATGTCAAAGAAAAACTTATTTCTCCTGGAAAACACGAGATTATAGTCGATAATAAGCAACACTACAAGTTTATCGGAAGAAACATAGATTTGGAATCACTCATCAAGTTGTATGTTGTTGAAGGAAAAATAGTTCGTCATGAGGACTGGTGGAATAAGAAACCACTTTTGAACAGAGAAACAGTCCAGTTACCAATGGTTGGTCGAATTATAGAAATGACTCGCAGATTTACAATGTTAGCAACTCATGCAATGATGGGATTTGGAAAAGATTAA 2883 42.18 MGVPATATLGDDFLRERAAKMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILRGPHEDLESYLGAIGQLRNIIKFFSSHKGFKSSEVVLNQANTLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPSSESPGHDSGGKNHSSNPHSAHHDNSLETAVYTPPSLIPPRVLPLLHDLSQQMVQAGHQQQILKIYRDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKACNEIKESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQTNSELATVTMQIMQALQSNLDGKSKHYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRNAWSKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSKALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRFGPLIDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKRHWSKLLPVSGGPKSEGLYILFVIGSRSMSLKRNPVLRIKAKKDDTLRAIEDYQNEVVDAKASGFASLPRKLDHSRRIKLAPVIINFFLLRLTHLHICLIILFSLLYLEQSGNSFYTRLPSLLFLEMPGDGGITADPTIEACSKEASDSKFAKRFADDIMPHVLNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISPGKHEIIVDNKQHYKFIGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRIIEMTRRFTMLATHAMMGFGKD 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32132059 32144146 - ClG42_05g0237900.10 Clacu05g2379 250126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2379 960 MobiDBLite consensus disorder prediction 173 201 - -
Clacu05g2379 960 Pfam Exo70 exocyst complex subunit C-terminal 281 640 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Clacu05g2379 960 Gene3D Exocyst complex component Exo70 78 653 - -
Clacu05g2379 960 Pfam Exocyst complex component Exo70 N-terminal 73 155 - -
Clacu05g2379 960 SUPERFAMILY Cullin repeat-like 80 644 IPR016159 -
Clacu05g2379 960 Coils Coil 688 715 - -
Clacu05g2379 960 MobiDBLite consensus disorder prediction 171 201 - -
Clacu05g2379 960 FunFam Exocyst subunit Exo70 family protein 88 651 - -
Clacu05g2379 960 PANTHER EXOCYST COMPLEX PROTEIN EXO70 17 646 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Clacu05g2379 960 SUPERFAMILY NTF2-like 810 926 IPR032710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2379 K07195 - - csv:101206262 1219.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1567 Clacu-Chr1:27776658 Clacu05g2379 Clacu-Chr5:32132059 2.60E-276 dispersed
Clacu04g0899 Clacu-Chr4:23330430 Clacu05g2379 Clacu-Chr5:32132059 4.70E-46 dispersed
Clacu05g2379 Clacu-Chr5:32132059 Clacu07g1457 Clacu-Chr7:29227190 9.50E-105 dispersed
Clacu05g2379 Clacu-Chr5:32132059 Clacu02g2122 Clacu-Chr2:34369728 3.40E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g774 . . . . . . . . . Cmo04g01515 . Cma18g00955 Car04g01504 Car18g00872 . . Cpe09g00367 . . . . . . . Cla05g02225 Cam05g2389 Cec05g2404 Cco05g2453 Clacu05g2379 Cmu05g2244 Cre05g2361 Cone1ag1422 Cone5ag0416 Cone11ag0966 . . . Chy10g01231 Cme10g00165 . . . . . . . Bma08g00906 . . . . . . . Cpe01g01290 . . . . . . . . . . . . . . . Lsi04g00159 Csa05g02705 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2379 . 12 653 EXO70 exocyst subunit family AT5G03540 76.3 1.3e-286 982.2
Clacu01g1567 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 5.7e-266 913.7
Clacu01g1567 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 1.7e-299 1025.0
Clacu05g2379 . 14 653 EXO70 exocyst subunit family AT5G52340 74.7 6.0e-273 936.8
Clacu01g1567 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 1.3e-176 616.7
Clacu05g2379 . 149 653 EXO70 exocyst subunit family AT5G52350 59.5 7.7e-166 580.9
Clacu03g0048 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Clacu03g0048 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Clacu07g1547 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.6e-175 611.7
Clacu01g0869 . 113 724 EXO70 exocyst subunit family AT5G13990 54.5 5.9e-189 657.9
Clacu07g1457 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Clacu07g1457 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Clacu07g1457 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.4e-219 756.9
Clacu03g1393 . 27 664 EXO70 exocyst subunit family AT5G50380 61.5 3.8e-225 778.1
Clacu03g0370 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.8e-211 732.6
Clacu08g1414 . 47 718 EXO70 exocyst subunit family AT4G31540 73.6 1.3e-294 1008.8
Clacu10g2053 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 1.9e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74