Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2379 ATGGGGGTGCCTGCAACTGCAACTTTGGGGGATGATTTTCTGAGAGAAAGAGCGGCTAAGATGAGAGAATCACTGCAAAAGAGCCAAACTATTACTGATAACGTTGTCACCATTCTCGGTTCCTTTGACCACCGTCTTTCAGCTCTCGAAACCGCCATGCGCCCTACTCAGATCAGAACCAATTCTATTCGTAAAGCTCACGAGAACATTGATAAGACTTTGAAGGCTGCGGAGGTTATTTTAGCACAATTTGATCTCTCTCGTCAGGCAGAAACGAAAATACTTAGAGGGCCACATGAGGATTTGGAAAGTTATCTCGGGGCTATTGGTCAGTTAAGAAACATTATCAAATTCTTTAGTAGCCATAAAGGTTTTAAGAGTAGCGAGGTAGTGCTTAACCAGGCAAATACGCTGCTTGCAAAAGCCATCTCAAAGCTGGAAGATGAGTTCAGACAGCTATTATCTTCCTACAGCAAACCTGTGGAGCCCGAGCGTCTTTTCGATTGCCTGCCAAAATCGTTGCAACCATCTTCAGAATCTCCTGGTCATGATTCAGGTGGAAAGAATCACTCCTCAAATCCACATTCTGCACATCATGATAATAGCTTAGAGACTGCTGTCTACACACCTCCCTCTCTCATACCACCACGTGTTCTACCACTGCTGCATGATTTATCACAGCAAATGGTTCAAGCTGGTCATCAACAACAAATTTTAAAAATCTACAGGGATACCCGTTCAGTCGTTCTGGAAGAAAGCCTACGGAAATTAGGAGTTGAAAAACTTAGCAAAGATGATGTCCAGAAGATGGCATGGGAGGTTTTAGAGGCAAAAATTGGGAACTGGATTCATTTTATGCGTATTGCAGTTAAACTGCTATTTGCTGGTGAACGAAAAGTTTGCGATCAAATATTTGAAGGCTTTGAATCACTTAGAGACCAATCATTTGCAGAGGTTACAAGTAGTAGTGTGTCTGTGCTATTCAGTTTCGGGGAGGCGATTGCAAAAAGCAAGAGGTCACCAGAAAAGTTGTTTGTACTTTTGGACATGTATGAAATTATGCGAGAGCTTCACTCCGAGATAGAGACAATTTTTAAGGGTAAAGCATGCAATGAGATCAAGGAATCTGCATCGGGTTTGACCAAACGGCTTGCTCAGACAGCTAAGGATACATTTGGTGATTTTGAGGAAGCTGTTGAAAAAGATGCCACAAAAACTGCGGTGTTGGATGGAACTGTTCATCCTTTAACAAGCTATGTGATTAATTATGTCAAATTTCTTTTTGACTATCAAGCAACCTTGAAGCAACTTTTTCAAGAATTTGAAGATAGTGGTCAAACGAATTCGGAATTGGCCACCGTCACAATGCAAATAATGCAGGCTCTTCAATCTAATTTGGATGGAAAATCTAAGCATTACAGAGACCCTGCTTTGACTCACTTATTCCTCATGAACAACATTCACTATATAGTTAGATCTGTTCGCAGATCTGAAGCCAAGGATTTGCTAGGGGACGATTGGGTTCAGAGACATAGGAGGGTCGTACAACAACATGCAAATCAGTATAAAAGGAATGCTTGGTCAAAGATTCTGCAATGTCTCTCTGTTCAAGGGTTAACTTCATCTGGCGGTGGCAGTGTACCTGGTATAGATGGAGGAAATAGTAGCGGAGTTTCTAAGGCGCTTATTAAAGACAGGTTCAAGACTTTCAACATGCAGTTTGAGGAACTGCATCAAAGACAATCTCAATGGGCAGTTCCCGATACTGAGTTGCGGGAGTCTCTAAGACTTTCAGTTGCTGAAGTCTTACTTCCTGCATACAGATCCTTCCTAAAACGTTTTGGGCCACTGATTGATGGTGGAAAGAATCCCCAAAAGTATGTCAGATACCAGCCAGAGGATCTCGAAAGGATGCTCGGAGAATTTTTCGAAGGGAAGAACTTGAGTGAACCTAAGCGTCATTGGTCCAAGTTGCTCCCTGTTTCTGGAGGTCCAAAATCTGAGGGTTTGTACATATTATTTGTAATAGGCTCACGCTCGATGTCCTTGAAGAGGAATCCTGTCTTGCGAATCAAAGCCAAAAAAGATGACACGCTGCGCGCCATTGAAGACTACCAAAATGAAGTTGTGGACGCAAAGGCTTCCGGCTTTGCTTCGCTGCCGAGAAAATTGGACCATTCTCGAAGAATCAAACTCGCTCCGGTAATCATCAACTTCTTTCTTCTTCGTCTCACTCATCTGCATATTTGTTTAATCATTCTCTTCTCTTTACTTTATCTGGAACAATCTGGAAATTCCTTCTATACTAGGCTTCCTTCCTTACTGTTCCTAGAAATGCCGGGAGATGGTGGAATCACTGCGGATCCAACCATCGAAGCCTGCAGCAAGGAGGCAAGCGACTCCAAATTCGCGAAGCGTTTTGCCGACGATATCATGCCTCACGTCCTCAATCTGTATGGATCTTCTGCAACGCCTCGGGATTTTGAAATCTACGCTCCCGATGCTTCGTTCGAGGATCCATTAACGAGAGCTCACGGAGTGAAGGAAATCAAATCGGCATTTTATTCTTTGTCCAAGGTCTTTAGTGAATCCAGAATTGTGGAATACAATGTCAAAGAAAAACTTATTTCTCCTGGAAAACACGAGATTATAGTCGATAATAAGCAACACTACAAGTTTATCGGAAGAAACATAGATTTGGAATCACTCATCAAGTTGTATGTTGTTGAAGGAAAAATAGTTCGTCATGAGGACTGGTGGAATAAGAAACCACTTTTGAACAGAGAAACAGTCCAGTTACCAATGGTTGGTCGAATTATAGAAATGACTCGCAGATTTACAATGTTAGCAACTCATGCAATGATGGGATTTGGAAAAGATTAA 2883 42.18 MGVPATATLGDDFLRERAAKMRESLQKSQTITDNVVTILGSFDHRLSALETAMRPTQIRTNSIRKAHENIDKTLKAAEVILAQFDLSRQAETKILRGPHEDLESYLGAIGQLRNIIKFFSSHKGFKSSEVVLNQANTLLAKAISKLEDEFRQLLSSYSKPVEPERLFDCLPKSLQPSSESPGHDSGGKNHSSNPHSAHHDNSLETAVYTPPSLIPPRVLPLLHDLSQQMVQAGHQQQILKIYRDTRSVVLEESLRKLGVEKLSKDDVQKMAWEVLEAKIGNWIHFMRIAVKLLFAGERKVCDQIFEGFESLRDQSFAEVTSSSVSVLFSFGEAIAKSKRSPEKLFVLLDMYEIMRELHSEIETIFKGKACNEIKESASGLTKRLAQTAKDTFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQATLKQLFQEFEDSGQTNSELATVTMQIMQALQSNLDGKSKHYRDPALTHLFLMNNIHYIVRSVRRSEAKDLLGDDWVQRHRRVVQQHANQYKRNAWSKILQCLSVQGLTSSGGGSVPGIDGGNSSGVSKALIKDRFKTFNMQFEELHQRQSQWAVPDTELRESLRLSVAEVLLPAYRSFLKRFGPLIDGGKNPQKYVRYQPEDLERMLGEFFEGKNLSEPKRHWSKLLPVSGGPKSEGLYILFVIGSRSMSLKRNPVLRIKAKKDDTLRAIEDYQNEVVDAKASGFASLPRKLDHSRRIKLAPVIINFFLLRLTHLHICLIILFSLLYLEQSGNSFYTRLPSLLFLEMPGDGGITADPTIEACSKEASDSKFAKRFADDIMPHVLNLYGSSATPRDFEIYAPDASFEDPLTRAHGVKEIKSAFYSLSKVFSESRIVEYNVKEKLISPGKHEIIVDNKQHYKFIGRNIDLESLIKLYVVEGKIVRHEDWWNKKPLLNRETVQLPMVGRIIEMTRRFTMLATHAMMGFGKD 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32132059 32144146 - ClG42_05g0237900.10 Clacu05g2379 250126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2379 960 MobiDBLite consensus disorder prediction 173 201 - -
Clacu05g2379 960 Pfam Exo70 exocyst complex subunit C-terminal 281 640 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Clacu05g2379 960 Gene3D Exocyst complex component Exo70 78 653 - -
Clacu05g2379 960 Pfam Exocyst complex component Exo70 N-terminal 73 155 - -
Clacu05g2379 960 SUPERFAMILY Cullin repeat-like 80 644 IPR016159 -
Clacu05g2379 960 Coils Coil 688 715 - -
Clacu05g2379 960 MobiDBLite consensus disorder prediction 171 201 - -
Clacu05g2379 960 FunFam Exocyst subunit Exo70 family protein 88 651 - -
Clacu05g2379 960 PANTHER EXOCYST COMPLEX PROTEIN EXO70 17 646 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Clacu05g2379 960 SUPERFAMILY NTF2-like 810 926 IPR032710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1567 Clacu-Chr1:27776658 Clacu05g2379 Clacu-Chr5:32132059 2.60E-276 dispersed
Clacu04g0899 Clacu-Chr4:23330430 Clacu05g2379 Clacu-Chr5:32132059 4.70E-46 dispersed
Clacu05g2379 Clacu-Chr5:32132059 Clacu07g1457 Clacu-Chr7:29227190 9.50E-105 dispersed
Clacu05g2379 Clacu-Chr5:32132059 Clacu02g2122 Clacu-Chr2:34369728 3.40E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2379 K07195 - csv:101206262 1219.53