Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2399 ATGAGAATAATCTCTCCGCCTTCTGCCTCTTCTTCTTCTTCTTCATCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAGCCAAACGACGGAGGAAGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGAATCAACAACGCCGCTGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGTATATTTGGGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGTAGTGGCTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTCGGAAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCAGCAATTGAGTATAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAACCATCAGTTCTTCAAGCAGCAGAGCAAGCAGAGGATCCCAATTATTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAGCAACAGCAACAGGATCAGCAACAACAACAACAAACGACATTCGCGGGCCCGCCCGACCTTCAGTTCTCAATCGAGAACAACCCAGGAATGGCTGTCATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAGGTCCCTGACCTCCCGCTCGAGAAATCAAGCGAATTGGCCGACCTATACTTCAACGAGATCGGGTTCGAGGACGACATTGGATTGATATTCGAAACGAGCTTAGAGAACAAGAACTGTGAGGGAGATGATCATAATAACAATAATAATAATAATAATAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1296 47.07 MRIISPPSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRAKRRRKNQDETKCQIHNHNANGINNAAASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKPSVLQAAEQAEDPNYSPASSEGEVVQQQQQDQQQQQQTTFAGPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFNEIGFEDDIGLIFETSLENKNCEGDDHNNNNNNNNNNNNNNVGKMEVNCSEKIRLFSTTTSPSSSSITTSVSCEFRV 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32311312 32315279 - ClG42_05g0239900.10 Clacu05g2399 250146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2399 431 CDD AP2 84 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Clacu05g2399 431 MobiDBLite consensus disorder prediction 1 70 - -
Clacu05g2399 431 Pfam AP2 domain 85 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 Pfam AP2 domain 185 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 MobiDBLite consensus disorder prediction 262 306 - -
Clacu05g2399 431 PRINTS Ethylene responsive element binding protein signature 226 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 MobiDBLite consensus disorder prediction 267 301 - -
Clacu05g2399 431 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 302 - -
Clacu05g2399 431 SMART rav1_2 84 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 SMART rav1_2 186 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 MobiDBLite consensus disorder prediction 380 397 - -
Clacu05g2399 431 MobiDBLite consensus disorder prediction 377 397 - -
Clacu05g2399 431 ProSiteProfiles AP2/ERF domain profile. 84 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 ProSiteProfiles AP2/ERF domain profile. 186 244 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 FunFam AP2-like ethylene-responsive transcription factor 83 152 - -
Clacu05g2399 431 SUPERFAMILY DNA-binding domain 185 246 IPR016177 GO:0003677(InterPro)
Clacu05g2399 431 SUPERFAMILY DNA-binding domain 83 152 IPR016177 GO:0003677(InterPro)
Clacu05g2399 431 CDD AP2 185 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 Gene3D AP2/ERF domain 185 246 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 Gene3D AP2/ERF domain 84 152 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2399 431 MobiDBLite consensus disorder prediction 1 40 - -
Clacu05g2399 431 FunFam AP2-like ethylene-responsive transcription factor 185 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2399 Clacu-Chr5:32311312 Clacu06g1443 Clacu-Chr6:25303807 2.40E-68 dispersed
Clacu06g1362 Clacu-Chr6:24483120 Clacu05g2399 Clacu-Chr5:32311312 4.90E-75 transposed
Clacu09g0347 Clacu-Chr9:2992537 Clacu05g2399 Clacu-Chr5:32311312 5.90E-72 transposed
Clacu10g1480 Clacu-Chr10:27915146 Clacu05g2399 Clacu-Chr5:32311312 2.30E-73 transposed
Clacu10g1562 Clacu-Chr10:28891926 Clacu05g2399 Clacu-Chr5:32311312 5.60E-45 transposed
Clacu05g2399 Clacu-Chr5:32311312 Clacu08g1038 Clacu-Chr8:20403835 8.70E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47764 PF00847 AP2 1.50E-12 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2399 - - - 0.0