Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2438 ATGACTTCCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGTTGAAGTCAAGGGAGTGTTTACAGGAGCAGGCTGTAACAGAATAGTGAACAACGTTTCTTGGGGAGCCTGTGATTTAGTGGCTTTTGGCGCTCAAAACGCCGTCGCCATCTTCTCTCCTAAGTCTGCACAAATTTTGACGACCCTTCCCGGTCACAACGCCTCTGTGAACTGCACTCATTGGCTTCCAAGTAACAAGTTTTCGTTTAGAGCCAAGCATTTGAAGTGTCATTATTTGCTATCTGGTGACTCTGATGGCGTCATTCATTTATGGGAGCTGTCTTTTCTGGACCAGAAGTGGAGAAATGTTTTACAACTACCAAAATCACACAAGAAAGGCATCACATGTATTACTGCACATGTAATTTCTGAAACGGTGGCAATTGTTGCATCTGCTTCTTCAGATGGTTCGATTTGTGTTTGGGAGGTCGCTTTTCCGTCTACCAAAGAAGGTGATTGTACATTGTTGTTGCTGGACTCGCTCATGGTTGGTTCCAAATCTATGGTGGCACTTTCATTAGCAGAATTGCCTGGAAATGTCAGTCATATGGTCCTGGCTATGGGAGGCTTGGATAATAAGATTCATCTGTATTGTGGGAAGAGAACTGGAGAGTTTGTTAAGGCATGTGAGCTCAAAGCGCATACAGATTGGATTAGAAGTCTGGACTTCTCTTTGCCTATGGGAAAAAATGGAGAAGCAAACAGCATTATGCTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAAATGGTTCTTCATGGTTCTTCAACTGACATAAATGGAGGATGCAAAAAAGAAGAAATAAGTTTAACATCTTATATACAAGGTCCTATATTTACTGCTGGACCATTAACTTACCAGGTATCATTAGAGTCACTTTTGATTGGACATGAGGATTGGGTATATTCAGTCCAATGGCAGCCGCCTTCAGCTTCAGAAACAGAAGGGGCTCCGTGCTATCAATCTGAAAGCATCCTATCTGCATCTATGGACAAGACAATGATGATTTGGAAGCCTGAAAAGATTTCTGGGATCTGGATGAATGTGGTTACTGTTGGAGAGTTAAGTCATTGTGCTTTAGGGTTCTATGGTGGGCATTGGAGCCCTAATGGAGATTCAATTTTAGCACATGGTTACGGTGGGTCTTTTCATCTCTGGAAAAATGTTGGTATTGGTTCAGATAACTGGAAACCTCAAAAGGTTCCCTCAGGACATTTTGCTGCTGTCATGGATATTTCATGGGCTAGATCTGGTGATTATATTATTTCAGTCAGCCATGACCAGACAACTCGGATTTTTGCTCCCTGGAAAAATGTCAATTCTCTCAAAGGAGGTTCTTGGCATGAAATTGCTCGACCTCAGGTTCATGGTCATGATATTAATTGTGTCACCATAATAAAAGGGAAGGGGAACCATCGCTTTGTCAGCGGAGCCGAAGAGAAAGTTGTTAGAGTCTTTGAAGCTCCATTATCTTTTTTGAAGACATTGAGTCATGCCACACTGGAGAATGTTGTGGCCACTGAAGATCACCTTGTGGATGTTCAGATCTTGGGTGCTAATATGTCGGCGCTCGGCCTTTCACAGAAACCTATTTATGTTCACTCTGTGGATAAGACACCAGACAGGAGTGGAAATGAAGGTATTGACACCCTTGAAACCATTCCCGATGCAGTTCCTGTCGTTCTTACTGAACCCCCCATTGAAGATCAATTGGCATGGCATACACTTTGGCCAGAGTCGCACAAACTTTATGGTCATGGGAATGAGCTATTTTCTCTAAGTTGTGATCACAAGGGGAAGCTTGTTGCATCATCCTGTAAGGCACAAACGGCATCAGTAGCAGAAATATGGCTTTGGGAAGTTGGTTCATGGAAGGCAGTCGGTCGTTTGCAATCTCACAGCTTAACAATAACGCAACTGGAGTTCTCCCATGATGACAGTATGCTATTGGCAGTCTCAAGGGATCGCCAGTTTTCTGTTTTCAAAATCCAGAGAACAGGCTCGGATGAAATCCACCATGAGCTTATATCAAGGCAGGAGGCACACAGAAGAATCATATGGTCATGTTCTTGGAACCCACATGGTCATGAGTTTGCAACAGGCTCTAGGGATAAGACTGTCAAGATATGGGCTGTCACAGCTGAATCTTCAGTTAAGCAGTTAACAACTCTCTCACAGTTCAAATCTAGTGTCACTGCTTTATCATGGGTCGGTCTTGATCCCAAGAGCAATGGACTCCTTGCAGTTGGAATGGAAAATGGCCTTCTTGAGTTTTGGAGTTTGTCTTTCAAAAGAACAGATAATGTCTGCTCAAATGTAGTTGCTTCAGTCGCTTTACGCCTCGATCCATTTGATTGTCATGTTTCCTCGGTCAACCGTTTGGCATGGAAGGAACCGGAGAAGAGTGGTGAAGAGTGCAGGAAGCTGCAACTTGCATCTTGTGGCGCTGATCACTGTGTTAGAGTGTTTGAGGTAAATGTTTCTGTATGA 2544 44.22 MTSCGGGGGGGGGGGEVEVKGVFTGAGCNRIVNNVSWGACDLVAFGAQNAVAIFSPKSAQILTTLPGHNASVNCTHWLPSNKFSFRAKHLKCHYLLSGDSDGVIHLWELSFLDQKWRNVLQLPKSHKKGITCITAHVISETVAIVASASSDGSICVWEVAFPSTKEGDCTLLLLDSLMVGSKSMVALSLAELPGNVSHMVLAMGGLDNKIHLYCGKRTGEFVKACELKAHTDWIRSLDFSLPMGKNGEANSIMLVSSSQDRGIRIWKMVLHGSSTDINGGCKKEEISLTSYIQGPIFTAGPLTYQVSLESLLIGHEDWVYSVQWQPPSASETEGAPCYQSESILSASMDKTMMIWKPEKISGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGIGSDNWKPQKVPSGHFAAVMDISWARSGDYIISVSHDQTTRIFAPWKNVNSLKGGSWHEIARPQVHGHDINCVTIIKGKGNHRFVSGAEEKVVRVFEAPLSFLKTLSHATLENVVATEDHLVDVQILGANMSALGLSQKPIYVHSVDKTPDRSGNEGIDTLETIPDAVPVVLTEPPIEDQLAWHTLWPESHKLYGHGNELFSLSCDHKGKLVASSCKAQTASVAEIWLWEVGSWKAVGRLQSHSLTITQLEFSHDDSMLLAVSRDRQFSVFKIQRTGSDEIHHELISRQEAHRRIIWSCSWNPHGHEFATGSRDKTVKIWAVTAESSVKQLTTLSQFKSSVTALSWVGLDPKSNGLLAVGMENGLLEFWSLSFKRTDNVCSNVVASVALRLDPFDCHVSSVNRLAWKEPEKSGEECRKLQLASCGADHCVRVFEVNVSV 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32587641 32593754 - ClG42_05g0243800.10 Clacu05g2438 250185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2438 847 Gene3D - 32 289 IPR015943 GO:0005515(InterPro)
Clacu05g2438 847 FunFam Elongator acetyltransferase complex subunit 2 375 687 - -
Clacu05g2438 847 Gene3D - 296 415 IPR015943 GO:0005515(InterPro)
Clacu05g2438 847 SUPERFAMILY WD40 repeat-like 42 504 IPR036322 GO:0005515(InterPro)
Clacu05g2438 847 PANTHER ELONGATOR COMPLEX PROTEIN 2 23 845 IPR037289 GO:0002098(InterPro)|GO:0033588(InterPro)
Clacu05g2438 847 Pfam WD domain, G-beta repeat 61 107 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 Pfam WD domain, G-beta repeat 312 355 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 Pfam WD domain, G-beta repeat 226 266 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 Pfam WD domain, G-beta repeat 694 728 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 Pfam WD domain, G-beta repeat 643 679 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 Pfam WD domain, G-beta repeat 414 451 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 Pfam WD domain, G-beta repeat 124 157 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 305 356 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 220 267 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 735 778 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 464 505 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 690 729 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 366 405 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 795 842 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 594 638 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 641 680 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 413 452 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 115 158 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 SMART WD40_4 58 108 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 728 - -
Clacu05g2438 847 Gene3D - 416 518 IPR015943 GO:0005515(InterPro)
Clacu05g2438 847 PRINTS G protein beta WD-40 repeat signature 145 159 IPR020472 -
Clacu05g2438 847 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Clacu05g2438 847 PRINTS G protein beta WD-40 repeat signature 716 730 IPR020472 -
Clacu05g2438 847 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 738 IPR001680 GO:0005515(InterPro)
Clacu05g2438 847 Gene3D - 691 846 IPR015943 GO:0005515(InterPro)
Clacu05g2438 847 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 312 780 IPR011047 -
Clacu05g2438 847 Gene3D - 537 690 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2438 K11374 - - csv:101209018 1594.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g358 . . . . . . Bma14g01910 . . Cmo18g01004 . Cma18g00995 . Car18g00918 Sed06g1949 Cpe09g00322 Cpe01g01327 Bhi07g01286 Tan04g0812 Cmetu10g0150 Lac13g0532 Hepe01g1164 . . Cla05g02273 Cam05g2443 Cec05g2464 Cco05g2508 Clacu05g2438 Cmu05g2301 Cre05g2419 . . Cone6ag0423 Cone9ag0445 Lsi04g00222 Csa05g02643 Chy10g01176 Cme10g00228 . . Bda07g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011732 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 30