Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2440 ATGGCAAAATTTCCTTCAATTTCCCTGTTTTTTCTCCTCTGCAACTTATGCCTTTCCAGGGCTTCTTTGAATGAAGAGGGCAATGCCCTTTTATCATTCAAACAATCCATTACTGAAGACCCAGAGGGGTGTTTCAGCAACTGGAATTCTTCCGATGAAACCCCATGTGGTTGGAATGGAGTTACATGCAAGGATCTAAGAGTTGTTTCTCTTAGTATTCCTAAGAAGAAACTTAATGGGGTTATTCCTTCTTCTCTGGGGTTTCTGTCTGAGCTTCGTCATGTGAATCTCAGGAGTAATAAGCTCCATGGAACCTTGCCAATGGAGCTTTTTCAAGCTAATGGAATTCAAAGTTTGGTGCTTTATGGAAATTCCTTCACTGGGTCTCTTCCAAATGAGATTGGTAAGCTAAAAAACCTTCAAATCTTGGATTTGTCTCGGAATTTCTTTAATGGGTCCTTGCCTGTTTCCTTAATGCAATGCACAAGGTTGAGAGTTCTTGATCTTGGTCAGAACAATTTTTCCAATTCTCTGCCTACTGGGTTTGGTTCCAATTTGAATTTCTTGGAAACATTGGATCTTTCTTACAATAAGTTTAATGGTTCAATTCCAATGGATATCGGTAATTTGTCTAGCTTACAAGGCACTGTTGATTTCTCACATAATTTGTTTTCTGGCTCTATCCCAGCCAGCCTGGGAAACCTTCCTGAAAAAGTTTATATTGATCTTACTTATAATAATTTGAGTGGTTCAATACCCCAGAATGGTGCTCTTATGAACAGAGGGCCAACTGCTTTTATTGGGAATCCTGGCCTTTGTGGGCCGCCGTTGAAGAACCCATGTTCTTCTGAAACTCCGGGCGCAAGTTCCCCGTCCTCGTTCCCATTTTTCCCAGACAATTATCCACCTGGGAGTTCTGAGGGTAATGGTAATAAGTATGACAAAGGAGGGCTGAGTAAGAGCACTTTGGTTGCAATAATCATCGGTGACATTGTCGGTATTTGCCTGATCGGGTTGCTGTTTTCATATTGCTATTCGAGGTTTTGCACTCATAGAAATGGGAAGAAGGCAGACCAATCTAATTATGGATTTGAGAAGGGTGGAAAAGGAAGAAAAGATTGTCTCTGCTTTCAAAAGGGTGAATCCGAGAACGTTTCGGAGCATATCGAGCAGTTTGATTTGGTACCTCTGGATTCACAAGTGACGTTTGATCTCGATGAACTTCTCAAGGCATCGGCATTTGTTTTGGGAAAAAGTGGTATCGGAATCGTGTATAAAGTTGTGCTTGAAGATGGACTCACTTTAGCTGTGAGAAGATTGGGTGAAGGAGGTTCTCAAAGATTAAAAGAATTTCAAACTGAAGTTGAAGCAATTGGGAAGTTGAGGCATCCGAATGTAGTTAGCCTTAGAGCATATTATTGGTCTGTTGATGAGAAACTGCTTATTTATGATTACATACCAAATGGGAACCTTGCATCTGCTATTCATGGAAAGCCCGGAACAACATCGTTTACACCGTTAGCGTGGTCTGTTCGGTTTAAAATCATGAAAGGCATTGCGAAAGGGTTGGTTTACTTGCACGAGTTTAGCCCGAAAAAGTATGTTCATGGTAATTTGAAAACAAACAACATACTTCTTGGACACGACATGACACCGCATATTTCTAATTTTGGGCTTGCCCGCCTTGTTAACATTGCTGGAGGATCGCCAACTGTGCGATCAAGTCATATAGCAGAGGAAAAACCACAAGAGAAACAACTAAAGTCTGCCACCTCTGAAGCTAGTACATTCAGTTCTAGCATGAGTACTTACTACCAAGCACCAGAAGCGTTCAAAGTCGTGAAGCCATCACAGAAATGGGACGTTTACTCGTATGGTGTGATATTACTTGAAATGATCACCGGAAGGTTGCCTATAGTTCAGGTGGGAGCGTCGGAAATGGATCTTGTTCAATGGATTCAACTCTGCATTGAGGAAAAGAAGCCGCTTTCAGATGTAATAGACCCATCTTTGGCTCCGGACGACGATGCAGACGAGGAGATTATTGCAGTTTTGAAGATAGCATTAGCTTGTGTTCAAAATAGTCCAGAAAGAAGACCTGCAATGAGACATGTTTGTGATGGATTGAGCAGGTTGGGTGTCACTCCAAACTGA 2154 41.69 MAKFPSISLFFLLCNLCLSRASLNEEGNALLSFKQSITEDPEGCFSNWNSSDETPCGWNGVTCKDLRVVSLSIPKKKLNGVIPSSLGFLSELRHVNLRSNKLHGTLPMELFQANGIQSLVLYGNSFTGSLPNEIGKLKNLQILDLSRNFFNGSLPVSLMQCTRLRVLDLGQNNFSNSLPTGFGSNLNFLETLDLSYNKFNGSIPMDIGNLSSLQGTVDFSHNLFSGSIPASLGNLPEKVYIDLTYNNLSGSIPQNGALMNRGPTAFIGNPGLCGPPLKNPCSSETPGASSPSSFPFFPDNYPPGSSEGNGNKYDKGGLSKSTLVAIIIGDIVGICLIGLLFSYCYSRFCTHRNGKKADQSNYGFEKGGKGRKDCLCFQKGESENVSEHIEQFDLVPLDSQVTFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRLKEFQTEVEAIGKLRHPNVVSLRAYYWSVDEKLLIYDYIPNGNLASAIHGKPGTTSFTPLAWSVRFKIMKGIAKGLVYLHEFSPKKYVHGNLKTNNILLGHDMTPHISNFGLARLVNIAGGSPTVRSSHIAEEKPQEKQLKSATSEASTFSSSMSTYYQAPEAFKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGASEMDLVQWIQLCIEEKKPLSDVIDPSLAPDDDADEEIIAVLKIALACVQNSPERRPAMRHVCDGLSRLGVTPN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32604044 32606274 - ClG42_05g0244000.10 Clacu05g2440 250187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2440 717 Gene3D Ribonuclease Inhibitor 181 283 IPR032675 -
Clacu05g2440 717 FunFam Leucine-rich repeat protein kinase family protein 486 715 - -
Clacu05g2440 717 Gene3D Phosphorylase Kinase; domain 1 378 485 - -
Clacu05g2440 717 SUPERFAMILY L domain-like 25 278 - -
Clacu05g2440 717 MobiDBLite consensus disorder prediction 278 313 - -
Clacu05g2440 717 FunFam Leucine-rich repeat receptor-like protein kinase 188 283 - -
Clacu05g2440 717 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Clacu05g2440 717 ProSiteProfiles Protein kinase domain profile. 410 712 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2440 717 CDD STKc_IRAK 416 712 - -
Clacu05g2440 717 PANTHER OS05G0588300 PROTEIN 178 712 IPR050994 -
Clacu05g2440 717 Pfam Protein kinase domain 416 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2440 717 Gene3D Ribonuclease Inhibitor 22 180 IPR032675 -
Clacu05g2440 717 Gene3D Transferase(Phosphotransferase) domain 1 486 715 - -
Clacu05g2440 717 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Clacu05g2440 717 Pfam Leucine Rich Repeat 189 210 IPR001611 GO:0005515(InterPro)
Clacu05g2440 717 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Clacu05g2440 717 Pfam Leucine Rich Repeat 217 235 IPR001611 GO:0005515(InterPro)
Clacu05g2440 717 Pfam Leucine Rich Repeat 163 184 IPR001611 GO:0005515(InterPro)
Clacu05g2440 717 SUPERFAMILY Protein kinase-like (PK-like) 415 707 IPR011009 -
Clacu05g2440 717 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 183 - -
Clacu05g2440 717 FunFam Leucine-rich repeat receptor-like protein kinase 393 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2440 Clacu-Chr5:32604044 Clacu10g1925 Clacu-Chr10:32873139 1.10E-62 dispersed
Clacu02g0829 Clacu-Chr2:9648005 Clacu05g2440 Clacu-Chr5:32604044 1.90E-76 transposed
Clacu04g0085 Clacu-Chr4:1898113 Clacu05g2440 Clacu-Chr5:32604044 1.30E-76 transposed
Clacu05g1185 Clacu-Chr5:10929788 Clacu05g2440 Clacu-Chr5:32604044 1.60E-70 transposed
Clacu11g1088 Clacu-Chr11:13651283 Clacu05g2440 Clacu-Chr5:32604044 8.70E-135 transposed
Clacu11g1567 Clacu-Chr11:26797546 Clacu05g2440 Clacu-Chr5:32604044 3.50E-112 transposed
Clacu01g0596 Clacu-Chr1:6164938 Clacu05g2440 Clacu-Chr5:32604044 2.70E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73596 PF00069 Pkinase 2.30E-29 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2440 - - - 0.0