Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2449 ATGGCTTCCAGAGAAGGGAGACGCCATCATCATCATCACCATCATCAGAATCTGGTGCCGCTTGCTGCTTTGATCAGTAAAGAGGTGAGGAGCGAGAGATTGGAGAAACCGACTGTAAGATATGGGAATGCAGCGCAGTCTAGAAAGGGGGAAGATTATTTTCTTATGAAAACTGATTGTCAGCGAGTTCCCGGGAACCCTTCATCCACTTTCTCTGTATTTGCTATATTTGATGGACACAATGGAAATGCTGCAGCAATTTACACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCATTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCTGGAACTACAGCTACGTTTGTGATCATTGATGGATGGACGGTGACAGTAGCATCAGTTGGAGATTCCCGTTGCATTTTGGATACTCAAGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGGCTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGCATCGTTGGTGGTGCTGAGATCGGCCCACTCCGTTGTTGGCCTGGAGGCTTATGCCTTTCTCGATCCATTGGAGATATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTCGTGAAACAAGTAAAGTTATCAAAGGCAGGCGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGATGCTTTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTAAGAACAAGAGGGTTGAAAGATGATACAACCTGCATAGTTGTAGACATAATTCCTCCTGATAATTCAGCACAGTCTTCCCCTCTTCCAAAGAAACAAAGCGTACTGAAATCTCTATTATTCAGGAAAAAGTCTCACAGTTCTAATAAGCTATCAAAGAGGCTTTCAGCTATCGGTTTCGTGGAAGAATTATTCGAAGATGGCTCCGCCATGCTGGCAGAAAGGCTTGGAACAGTAGAGTTGAGTGGATCTGGACATGGCACGCCCAGCCTGTTCACTTGTGCTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGTGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAACGTCCCAGCGGGGTAAGAGTGGCGTAG 1305 47.36 MASREGRRHHHHHHHQNLVPLAALISKEVRSERLEKPTVRYGNAAQSRKGEDYFLMKTDCQRVPGNPSSTFSVFAIFDGHNGNAAAIYTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSKAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPLPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGFVEELFEDGSAMLAERLGTVELSGSGHGTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGVRVA 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32651776 32654473 + ClG42_05g0244900.10 Clacu05g2449 250196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2449 434 Pfam Protein phosphatase 2C 66 287 IPR001932 -
Clacu05g2449 434 PANTHER PROTEIN PHOSPHATASE 41 301 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu05g2449 434 FunFam probable protein phosphatase 2C 5 40 307 - -
Clacu05g2449 434 SUPERFAMILY PP2C-like 47 302 IPR036457 -
Clacu05g2449 434 SMART PP2C_SIG_2 35 302 IPR001932 -
Clacu05g2449 434 Gene3D - 41 309 IPR036457 -
Clacu05g2449 434 CDD PP2Cc 49 302 IPR001932 -
Clacu05g2449 434 SMART PP2C_4 30 300 IPR001932 -
Clacu05g2449 434 ProSiteProfiles PPM-type phosphatase domain profile. 33 302 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1789 Clacu-Chr3:31627277 Clacu05g2449 Clacu-Chr5:32651776 8.20E-173 dispersed
Clacu05g2171 Clacu-Chr5:30362543 Clacu05g2449 Clacu-Chr5:32651776 6.10E-144 dispersed
Clacu05g2449 Clacu-Chr5:32651776 Clacu05g0646 Clacu-Chr5:5375511 8.10E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2449 - - - 0.0