Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2466 ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCTAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAACGGGTCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCCAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAACCCGACCATCGAACCAAACCAAAACCCGAATCGGTTCCTGAATTAGGAATTGGGCCTAGTGTTGAGGAACCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA 615 54.15 MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEEPGRVLRNGSRFEKGDVELELTLKSAQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32783164 32784751 + ClG42_05g0246600.10 Clacu05g2466 250213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2466 204 MobiDBLite consensus disorder prediction 151 186 - -
Clacu05g2466 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 162 - GO:0010468(PANTHER)
Clacu05g2466 204 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Clacu05g2466 204 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1330 Clacu-Chr5:13981906 Clacu05g2466 Clacu-Chr5:32783164 1.30E-52 dispersed
Clacu05g2466 Clacu-Chr5:32783164 Clacu06g1588 Clacu-Chr6:26746811 8.90E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47767 PF03195 LOB 5.90E-23 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2466 - - - 0.0