Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2480 ATGGGAAAGAAGCTGGATGCACTGCTGGGAAGAAGCTTTAAGACCACAAGGTTCAAAGCTCTTGTGAATCTGGCCATATCTCGCCTCGCTGTTCTTGCAAACCAGCGCCAAGTCAGATCTTCCCAGGCTCGTTCTGACGTAGTTCAGTTGCTGCAGCTTGGCCACCAAGAGAGAGCCCTCTTTCGGGTGGAGCAAGTGATTAAGGACCAGAAACTGCTGGATGCGTATGCCATAATAGAGAGTTATTGTGAGGTTGTACTGGAAAGAATCAAGCTACTTGAACATGAGAGAGAATGTCCAGAAGAACTTAAGGAGGCAATTTCAGGTTTGATTTTTGCATCTTCTAGATGTGGGGATTTCCCAGAGCTTATAGAAATTCGTTCCGTAATTACCAGTCGTTTTGGGAAGGAGTTTACTGCTCGTGCTATTGAGTTACGCAACAATTGTGCTGTTGGTCCAATGATAGTACAGAAGCTGTCAGCTAGGCCACCAAGCTTGGAGATCAAATTGAAGTTACTTAAACAAATTGCTTCTGAACATGGCATTACTTTGAAAGATTTGGAAGCTTATGAAGTTTCAACTGAGACGCAGGAGAAAGTTGTGGCAGAAGAGAAGAAGGATCAACCACAGCAGGAAACCAAAGTGGAAGGTGTTTTTCAGATTTTACCTGAAGAGATAGAGAAAGACAATCGGTATGCTGATTCGATGAGAGGAAGAAAGAAGTACAAAGATGTGGCAGACGCTGCTCAGGCAGCATTCGAGTCAGCAGCTTATGCAGCAGCTGCAGCAAGAGCTGCTGTGGAACTCTCTCAATCTAAATCACTTGATCACGATGACCCGAGTAGTCTGAGTCCAAAACCAAGAAAATCCACTGAAACTCTTGAATCGAAGAACACTGAGATAGAATTGGAATCAAAAAACAAGGAAACACACAGTGGAAGTAGGTCTATAGGAGTGGAGGAGAGTGAAAATGGAACAGAATCGAAGCAGCCAGTGTCTTCTTCTAGTTCGGAAGCCGGGAATGCTAGTTTAAAGGAAAATGAGATTCCAATAGAAGCACTAATTGATCTTCTGGAGAAGGATTTGGTTTTGGACGAGAGTGATATTGATGCTGGGAATGGAGAAAGCAGCAGTTCAACTCTTGAGGAGAGGAATTCGAGCTTCGAGTGTCGTGAGAAGATGGAATCAGAGTCTGCAGAGATCACAGCAAACAATGAGGAATCTGATAACAAAAATACTGCACAAAATTTAAGCATAGAGAATAAGGCTGTTATAAGGACAATAGATGTCCGTGGGCACTGA 1302 43.55 MGKKLDALLGRSFKTTRFKALVNLAISRLAVLANQRQVRSSQARSDVVQLLQLGHQERALFRVEQVIKDQKLLDAYAIIESYCEVVLERIKLLEHERECPEELKEAISGLIFASSRCGDFPELIEIRSVITSRFGKEFTARAIELRNNCAVGPMIVQKLSARPPSLEIKLKLLKQIASEHGITLKDLEAYEVSTETQEKVVAEEKKDQPQQETKVEGVFQILPEEIEKDNRYADSMRGRKKYKDVADAAQAAFESAAYAAAAARAAVELSQSKSLDHDDPSSLSPKPRKSTETLESKNTEIELESKNKETHSGSRSIGVEESENGTESKQPVSSSSSEAGNASLKENEIPIEALIDLLEKDLVLDESDIDAGNGESSSSTLEERNSSFECREKMESESAEITANNEESDNKNTAQNLSIENKAVIRTIDVRGH 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32917979 32919665 + ClG42_05g0248000.10 Clacu05g2480 250227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2480 433 MobiDBLite consensus disorder prediction 385 400 - -
Clacu05g2480 433 MobiDBLite consensus disorder prediction 271 316 - -
Clacu05g2480 433 MobiDBLite consensus disorder prediction 368 422 - -
Clacu05g2480 433 MobiDBLite consensus disorder prediction 401 422 - -
Clacu05g2480 433 Gene3D - 6 193 IPR042277 -
Clacu05g2480 433 MobiDBLite consensus disorder prediction 317 343 - -
Clacu05g2480 433 FunFam Vacuolar protein sorting-associated protein IST1 9 191 - -
Clacu05g2480 433 Pfam Regulator of Vps4 activity in the MVB pathway 19 182 IPR005061 GO:0015031(InterPro)
Clacu05g2480 433 MobiDBLite consensus disorder prediction 271 346 - -
Clacu05g2480 433 Coils Coil 391 411 - -
Clacu05g2480 433 PANTHER IST1 FAMILY MEMBER 11 389 IPR005061 GO:0008104(PANTHER)|GO:0015031(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2480 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2480 Clacu-Chr5:32917979 Clacu08g0665 Clacu-Chr8:15707133 9.30E-68 dispersed
Clacu01g2139 Clacu-Chr1:32982186 Clacu05g2480 Clacu-Chr5:32917979 5.40E-36 transposed
Clacu03g0967 Clacu-Chr3:14167786 Clacu05g2480 Clacu-Chr5:32917979 4.30E-38 transposed
Clacu03g1623 Clacu-Chr3:29892463 Clacu05g2480 Clacu-Chr5:32917979 9.40E-38 transposed
Clacu05g1322 Clacu-Chr5:13671540 Clacu05g2480 Clacu-Chr5:32917979 1.30E-61 transposed
Clacu08g0461 Clacu-Chr8:7239997 Clacu05g2480 Clacu-Chr5:32917979 1.10E-34 transposed
Clacu05g2480 Clacu-Chr5:32917979 Clacu08g0663 Clacu-Chr8:15631018 2.30E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g289 . . . . . Bpe10g00940 . Bma15g00084 . Cmo18g01044 . Cma18g01031 . Car18g00954 Sed06g1874 Cpe09g00289 Cpe01g01779 Bhi07g01341 Tan04g0880 Cmetu10g0761 Lac13g0479 Hepe01g1205 . . Cla05g02312 . Cec05g2507 Cco05g2549 Clacu05g2480 Cmu05g2341 Cre05g2458 Cone13ag0839 . . Cone9ag0468 Lsi04g00267 Csa05g02599 Chy10g01134 Cme10g00273 Blo06g00966 . . . Bpe11g01695 Bpe02g02080 . . . Cmo04g02140 . Cma04g02037 . Car04g01983 . . . . . . . . . . . . . . . . . . . Chy09g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012784 1 2 0 0 1 0 2 0 0 1 1 1 2 1 1 2 1 0 1 0 1 1 1 1 1 1 1 1 1 2 28