Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2494 ATGGATTTCCTTCATAATTTTCTGGATATTCGAGTAGGAATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGCAAAATTCAGGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTTGTCACCAGAGCTATTGAATCTTGCCGGCAACAGTTATCTGGAGTGTCGACAGACAGCTCTGAACATACTTCAAGCGATGGCCCTGTTTTGGAGGAATTTATTCCGATTAACAAACCTTCTGTGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCAGAGAAAATTGAATTGGGTCGATCGGATTGGCTTAAATCGGCTCAGCTTTGGAATCAGTCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTCATCGGTTGTTGAGGTCAAAAAGAATGTCGGTGGCGGTGCTTTTCAACCATTTCAGAAGGAGAAAACAACTCCATTGAAAACAGAGTCAGTGGTCGTCGGTAAATCGGACGGTTCTTCGCCAATTCCGGAGGCGACAACGAGTTCGACGGCGGAAACCGCCTCCAAAGGTGGCGGTGGAACCAGTAAACGAGAAGATAAAGAGTCCCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCACGTTGCTACACCAAAACAAATCCGAGAGTTAATGAAGGTCGATGGACTCACTAACGACGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGGCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTGCCGCCACCGCCTCCACCGAAATACACGGTGGCGACGGCAGCGAAAGCGAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTGCGACGGCAGACGACGGCAGAGGAAGGGAAGGCGAGCCACAGCGGGGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTGCACCCACACCACCACAACCTCGCCGTCGGCGGCGTAG 1074 51.02 MDFLHNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIESCRQQLSGVSTDSSEHTSSDGPVLEEFIPINKPSVNSHFEIEEDEQSKPEKIELGRSDWLKSAQLWNQSPDPPVTEDVAKETTSSVVEVKKNVGGGAFQPFQKEKTTPLKTESVVVGKSDGSSPIPEATTSSTAETASKGGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVATAAKARNGIYAPVATAVRRQTTAEEGKASHSGGVVHSNSPATSSCTHTTTTSPSAA 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33037201 33038653 - ClG42_05g0249400.10 Clacu05g2494 250241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2494 357 Gene3D - 205 262 - -
Clacu05g2494 357 MobiDBLite consensus disorder prediction 321 357 - -
Clacu05g2494 357 MobiDBLite consensus disorder prediction 191 211 - -
Clacu05g2494 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Clacu05g2494 357 MobiDBLite consensus disorder prediction 159 211 - -
Clacu05g2494 357 FunFam Myb family transcription factor 205 263 - -
Clacu05g2494 357 MobiDBLite consensus disorder prediction 159 189 - -
Clacu05g2494 357 MobiDBLite consensus disorder prediction 333 357 - -
Clacu05g2494 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677(InterPro)
Clacu05g2494 357 Coils Coil 16 36 - -
Clacu05g2494 357 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Clacu05g2494 357 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Clacu05g2494 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 326 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2494 Clacu-Chr5:33037201 Clacu11g0408 Clacu-Chr11:3838314 1.30E-46 dispersed
Clacu05g2494 Clacu-Chr5:33037201 Clacu08g0656 Clacu-Chr8:15489952 8.80E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47770 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2494 - - - 0.0