Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2496 ATGGACGGTATTTGCATTGACGAAAGCACTTCCACTGAGTCTCAATCCCCGGTGGTTAAATCTCCGCCGCCGGAGACCAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTAGTTCTCGATTCCGACTCCAGCGGCGGCGGAGTTGAAGCAGAGTCCCGGAAACTACCATCGTCTCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCCTACGACGTGGCTGCCCAACGTTTCCGTGGCCGTGACGCGGTTACCAATTTCAAACCTTTAGCACACGGCGGTGAAGAAGACGACGCGGTTTCTGCCTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGCTACGTAAGCATACTTACTTAGACGAACTTCACCAAAGCAAACGAAACGCCGGGTTATCCGGTTGGGATCGGAAACGAAACCGATCGTTACCCGGGTTAGATACGGACCCGGAAACCTCTCGTGAACTTCTATTCGAAAAAGCCGTTACCCCAAGCGATGTGGGGAAATTGAACCGTTTGGTCATCCCGAAACAACACGCTGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTTTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATCGTTAGCTTCCTGAAATCGACCGGACAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGACTTCTACTGCAACCGGGTCCGACATGAACCCGGTTCAGACCGTTAGACTGTTTGGAGTTGACATTATCAAAGTGTCGCCACATAGTGGGTGTAGTGAGAAGAGGAGGAGGGAATTGGAATTTCTCGCTTCACAATGTACCAAGAAACAAAGGATTGTGGGAGCAATGTAA 1047 50.91 MDGICIDESTSTESQSPVVKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAHGGEEDDAVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGWDRKRNRSLPGLDTDPETSRELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKTSTATGSDMNPVQTVRLFGVDIIKVSPHSGCSEKRRRELEFLASQCTKKQRIVGAM 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33046443 33047489 - ClG42_05g0249600.10 Clacu05g2496 250243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2496 348 SUPERFAMILY DNA-binding pseudobarrel domain 183 279 IPR015300 -
Clacu05g2496 348 SMART rav1_2 60 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2496 348 Gene3D - 176 302 IPR015300 -
Clacu05g2496 348 ProSiteProfiles AP2/ERF domain profile. 60 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2496 348 FunFam AP2 domain-containing protein RAP2.8 59 116 - -
Clacu05g2496 348 Pfam AP2 domain 59 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2496 348 Gene3D AP2/ERF domain 59 116 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2496 348 CDD AP2 59 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2496 348 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677(InterPro)
Clacu05g2496 348 Pfam B3 DNA binding domain 187 288 IPR003340 GO:0003677(InterPro)
Clacu05g2496 348 MobiDBLite consensus disorder prediction 7 22 - -
Clacu05g2496 348 ProSiteProfiles B3 DNA-binding domain profile. 187 292 IPR003340 GO:0003677(InterPro)
Clacu05g2496 348 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 314 IPR044800 GO:0003700(InterPro)
Clacu05g2496 348 CDD B3_DNA 186 274 IPR003340 GO:0003677(InterPro)
Clacu05g2496 348 MobiDBLite consensus disorder prediction 1 30 - -
Clacu05g2496 348 SMART B3_2 187 292 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0123 Clacu-Chr1:1193179 Clacu05g2496 Clacu-Chr5:33046443 5.30E-40 dispersed
Clacu05g2496 Clacu-Chr5:33046443 Clacu06g0233 Clacu-Chr6:2713577 5.10E-40 dispersed
Clacu03g0980 Clacu-Chr3:15079741 Clacu05g2496 Clacu-Chr5:33046443 1.50E-102 transposed
Clacu03g1420 Clacu-Chr3:27387931 Clacu05g2496 Clacu-Chr5:33046443 2.70E-44 transposed
Clacu06g1314 Clacu-Chr6:24113675 Clacu05g2496 Clacu-Chr5:33046443 1.80E-45 transposed
Clacu03g0797 Clacu-Chr3:8999628 Clacu05g2496 Clacu-Chr5:33046443 1.90E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47771 PF02362 B3 1.20E-27 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2496 K09287 - csv:101203784 623.624