Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2500 ATGTGTGGGGAGGATCAAGAAGAGGATCATCATCAACAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAACAACAGCTACAAAACAACAACAACACTGATCATCATATGATGTACGGAGGAGATCATCTTCATCATCATGGAATTGGAAGATCAGGGTTAATTTTTCCACCCGAAATCGTGTCGCCCATGCTGCAACCGTGGTCGTCGCTTAACCCGTTTATGATCCCTCCGCCACCGCCACCGCCGCCATCAACATCATTATCATGTTCATCATCATCCTATGGTAGTTTGTTTACCCGAAGACCACCTAATTGTCTTCAATTTGCTTACGATGGTCCTTCTTCGGCGGACCACCTAGGTCGAATCATATCGACCACACTCGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAACTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCGAAACTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATGGATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGACCTTCTCCCTGATCTCATTAAAACCCTCAAATCCTTACGTTTAACAACTCTTAAAGCTGAAATCACAACTCTTGGTGGTCGTTTAAGAAATGTGTTGTTTGTCACTGCTGACGAAGAACAACAACAACAAAATATTAGCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACTACCACTACAAATAACATTAATATCCTTTAA 1080 41.48 MCGEDQEEDHHQQHQGECSQTIENMFQEQLLLHQQQQLQNNNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIVSPMLQPWSSLNPFMIPPPPPPPPSTSLSCSSSSYGSLFTRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISNGSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQNISSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33100251 33102747 - ClG42_05g0250000.10 Clacu05g2500 250247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2500 359 CDD bHLH_AtAIG1_like 167 244 - -
Clacu05g2500 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983(InterPro)
Clacu05g2500 359 SMART finulus 178 227 IPR011598 GO:0046983(InterPro)
Clacu05g2500 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 227 IPR036638 GO:0046983(InterPro)
Clacu05g2500 359 Gene3D - 167 228 IPR036638 GO:0046983(InterPro)
Clacu05g2500 359 PANTHER TRANSCRIPTION FACTOR BHLH30 147 352 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu05g2500 359 FunFam transcription factor bHLH30 167 230 - -
Clacu05g2500 359 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1910 Clacu-Chr1:31219955 Clacu05g2500 Clacu-Chr5:33100251 9.90E-17 dispersed
Clacu02g1834 Clacu-Chr2:31820062 Clacu05g2500 Clacu-Chr5:33100251 2.40E-31 dispersed
Clacu05g2500 Clacu-Chr5:33100251 Clacu08g1326 Clacu-Chr8:23274711 3.00E-27 dispersed
Clacu06g1053 Clacu-Chr6:17884736 Clacu05g2500 Clacu-Chr5:33100251 9.20E-73 transposed
Clacu10g1359 Clacu-Chr10:26655724 Clacu05g2500 Clacu-Chr5:33100251 2.90E-39 transposed
Clacu11g0755 Clacu-Chr11:7380409 Clacu05g2500 Clacu-Chr5:33100251 1.70E-29 transposed
Clacu03g0774 Clacu-Chr3:8726986 Clacu05g2500 Clacu-Chr5:33100251 3.40E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47773 PF00010 HLH 5.70E-13 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2500 - - - 0.0