Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2505 ATGGCTTCCGAGAGCGTTTCCAGATCCAGTTCAGCGGCCGATTCTTATATTGGAAGCTTGATAAGCTTAACTTCCAAGAGTGAGATTAGATACGAAGGTGTTCTTTACAACATCAACACCGAAGAGTCCAGTATCGGACTGAGAAATGTACGGTCATTTGGAACAGAAGGGAGAAAGAAGGATGGACCACAAGTCCCACCAAGTGACAAAGTTTTTGAATACATCTTGTTCCGTGGAAGTGATATCAAGGATCTACAAGTAAAATCTTCTCCTCCTGTTCAGACTACATCCTTGATAAATAATGATCCAGCTATTATTCAGTCTCACTATCCTCGTCCAGCATCGACTTCTTCAAGCTTGCCTCCTCCTGTTAGTGGGCCTTTGCCTGATATTAATTCTCAGGCCATGCCTATGGGAATTCCAGGATCTAATTTCCAGGGTGGGTTGCCTTTATATCATCCTGGAGGAAATGTAGGGTCTTGGGGAGCTTCTCCTACGCCATCTCCCCCAAATCCAAGTGGTGGTGGGCTTGCTTTGCCAATGTACTGGCAAGGGTATTATGGCCCCCCTAATGGACTTCCTCATATGCAACAGCAGTCATTACTTCGTCCACCACCTGGCCTGTCATTGCCTTCTTCCTTGCAGCAGCCCCTGCAATATCCTAATCTTAATGCTTCTTTACCCACTGGGGCACCAAATTTATTAGAAGTTCCATCTTCTTTATTCTCTGCTAATCCTACCACTCCTAGTTTATTGTCCACAGCAATGCCACCAGTAACTGTATCTTCGTCACTCCCATCTGTGCTTTCGGCTCCACAGACCTCTGAGATATCATCAAGCTCAGTGGCCAACAAGACAGTAAATTCTGCTCTTCCTCAAGCTCCTCTAAGTACTAATTTGCCATCGCTCTCTCCTTTGACGGCGAGTTCAGATGTCAGCCCTGTTGTGCCTCCAACTACTAACAAAACTACTACAGTTTCTGGTCCAGCATTGTCTTACCAAACTGTCTCTCAATCTACATCCTCTGTTGTTGGAACATCGAACTCTGCTCTCACAGGTGCACCTGCACCTACCCTTGTGACTCCAGGACAGCTGTTGCAAACTACTGTAGCCTCTTCATCTTTGCAAACAGTTCAAAAGGACGTTGAGGTGGTTCAAACATCTTCCTCCTTAGCAGCCGAACAAACTGTTCCAGCAGCCGATACTCAGCCACCATTATTACCGTTACCAGTGGCTTCACAAGCTATTCATAAGCCAAATGGTTCAACTTCGCAAACTCGGTACATCCACAGGGGACGTGGTAGAGGAAAACGATTTGGGAACTCGCATCAAACAGAAAGATTTACAGAAGATTTTGACTTCACGGCAATGAATGAGAAATTTAACAAGGATGAAGTCTGGGGTCATCTTGGCAAGAATACCAAATCTCATCCAAAGTACAATGATGGGGATGAAAAGTTCAGTGATGAAGATGATGTCTATGAGGAAGATGATGGTGAATCTTCAAAGTTGGAGATCAAGCCTGTGTACAATAAGGACGACTTTTTTGATACTCTCTCGTGCAACAATCCTGACAATGAAGCTCAAAATGGAAGGAGGACCAGATACTACGAACAAATCAAGTTGGACACTGAGACATTTGGTGAATTTGCAAGATTCCGAGGTGGTCGTGGTGGATTTTCTTCTGGACGTGGTGGCCGTCGTGGTGGTTATTACGGGAGAGGATACGGCCATGTTGGAAGGGGTCGAGGGCGGGGAATGCATAACTATAATCCCCTACTTACCACTGTACTCTTGGCCGAGCCAAGATCGTTGAGCTGCAGACCGCCTTTCTCTGTCCCCATGGCCGCGGCATTGCCCTCACTCACCCCATTACTCATCTTTGCCAGAATCTTTGGTCTGCTTGTTGCCGTTCTGGTCTTCGTTTGGGCTTTTGCATTCAGTTCCAGCTTCGGCCATCGCTCCCCTGCCCGCGATGACCATCTCTTCGACGTTCTGCATCCTTTGTTCATGGTAATTGGTCTCATTCTCCTCAGCGGGGAAGCAATTTTGGTCCATAGCTGGTTGCCTGGTTCGAGAAATTTGAGGAAATCTGTTCATCTGAGTCTTCAAGGGCTGGCTTTAGCTTCTGGGATTTCCGGAATTTGGACCAAGTTTCATTGGGATCGTGGCTTTTTGGCTAATTTCCACAGTTTACATTCTTGGATGGGTTTGATTGTTGTCACTTTGTTCGGAGCTCAGTGGATGATGGGGTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGGGCAACAAGAGAAAGAGTGCTGCCATGGCATGTGTTCCTTGGGTTATACAGTTATGCATTGGCAGTGGTAACAGCAGAAACAGGGCTTCTTGAGAAGTTGACATTGTTGCAAACCAAGAGAAATGTCCCTAGGAAGGGTCCTGAAGCCATGGTTGTAAACAGTCTAGGCTTGGCACTGGCTTTGCTTACTGGAACTGTTATGCTCACTGCTATATCTCCTAAATATCCTCCTTCCCTCCCCACCACCAAACAACAACCATTTTTCTCTAATTCAAAGCCCTTACCTTCTTAA 2577 46.29 MASESVSRSSSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQTTSLINNDPAIIQSHYPRPASTSSSLPPPVSGPLPDINSQAMPMGIPGSNFQGGLPLYHPGGNVGSWGASPTPSPPNPSGGGLALPMYWQGYYGPPNGLPHMQQQSLLRPPPGLSLPSSLQQPLQYPNLNASLPTGAPNLLEVPSSLFSANPTTPSLLSTAMPPVTVSSSLPSVLSAPQTSEISSSSVANKTVNSALPQAPLSTNLPSLSPLTASSDVSPVVPPTTNKTTTVSGPALSYQTVSQSTSSVVGTSNSALTGAPAPTLVTPGQLLQTTVASSSLQTVQKDVEVVQTSSSLAAEQTVPAADTQPPLLPLPVASQAIHKPNGSTSQTRYIHRGRGRGKRFGNSHQTERFTEDFDFTAMNEKFNKDEVWGHLGKNTKSHPKYNDGDEKFSDEDDVYEEDDGESSKLEIKPVYNKDDFFDTLSCNNPDNEAQNGRRTRYYEQIKLDTETFGEFARFRGGRGGFSSGRGGRRGGYYGRGYGHVGRGRGRGMHNYNPLLTTVLLAEPRSLSCRPPFSVPMAAALPSLTPLLIFARIFGLLVAVLVFVWAFAFSSSFGHRSPARDDHLFDVLHPLFMVIGLILLSGEAILVHSWLPGSRNLRKSVHLSLQGLALASGISGIWTKFHWDRGFLANFHSLHSWMGLIVVTLFGAQWMMGFLSFWHWREVRATRERVLPWHVFLGLYSYALAVVTAETGLLEKLTLLQTKRNVPRKGPEAMVVNSLGLALALLTGTVMLTAISPKYPPSLPTTKQQPFFSNSKPLPS 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33141740 33150081 - ClG42_05g0250500.10 Clacu05g2505 250252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2505 858 MobiDBLite consensus disorder prediction 468 486 - -
Clacu05g2505 858 SMART 561_7 666 791 IPR006593 -
Clacu05g2505 858 Pfam FDF domain 447 550 IPR019050 -
Clacu05g2505 858 CDD LSm14_N 16 87 IPR025609 -
Clacu05g2505 858 PANTHER SCD6 PROTEIN-RELATED 13 586 - GO:0000932(PANTHER)|GO:0003729(PANTHER)|GO:0033962(PANTHER)|GO:0034063(PANTHER)
Clacu05g2505 858 ProSiteProfiles Sm domain profile. 8 91 IPR047575 GO:0003723(InterPro)
Clacu05g2505 858 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Clacu05g2505 858 CDD Cyt_b561_ACYB-1_like 660 799 - -
Clacu05g2505 858 FunFam Cytochrome b reductase 1 619 840 - -
Clacu05g2505 858 SMART FDF_2 446 551 IPR019050 -
Clacu05g2505 858 MobiDBLite consensus disorder prediction 468 502 - -
Clacu05g2505 858 ProSiteProfiles TFG box profile. 531 551 IPR025768 -
Clacu05g2505 858 FunFam Trailer hitch, isoform C 10 92 - -
Clacu05g2505 858 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Clacu05g2505 858 ProSiteProfiles DFDF domain profile. 440 476 IPR025762 -
Clacu05g2505 858 Gene3D - 7 92 - -
Clacu05g2505 858 ProSiteProfiles Cytochrome b561 domain profile. 628 833 IPR006593 -
Clacu05g2505 858 ProSiteProfiles FFD box profile. 508 523 IPR025761 -
Clacu05g2505 858 SMART LSM14_2 10 110 IPR025609 -
Clacu05g2505 858 Pfam Eukaryotic cytochrome b561 666 796 IPR006593 -
Clacu05g2505 858 Gene3D - 616 838 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0677 Clacu-Chr1:7320821 Clacu05g2505 Clacu-Chr5:33141740 4.30E-24 transposed
Clacu07g0672 Clacu-Chr7:13128223 Clacu05g2505 Clacu-Chr5:33141740 6.10E-23 transposed
Clacu09g1349 Clacu-Chr9:15731851 Clacu05g2505 Clacu-Chr5:33141740 6.60E-28 transposed
Clacu11g0678 Clacu-Chr11:6565466 Clacu05g2505 Clacu-Chr5:33141740 1.70E-44 transposed
Clacu01g0580 Clacu-Chr1:5929516 Clacu05g2505 Clacu-Chr5:33141740 8.90E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2505 K18749 - csv:101205721 914.835