Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2514 ATGTACAACAGTTATGTCAGCTCAACTGTATATTCCATTCGGAGTAAAGGGCCTCTTTCCCATTGCTTTAATGAGCGTCCCATCTCCTTAAATGAAAGATGTAATGGGAACCCATTGCATCTTCCATCATCGTCATCATCATGTTGTTCTTGTTGTGTTTGTTATACATTTCCAACCCACAGAGTGTTTGTAGGGCCTAGCATGTTCTATGGGCCGAGGCAATCCACCTTGCTTCAATGGTCGATCTCTAGGAGGTTGATGTTGGGTTGCCGAAACCGGTTCTGTTATACGCTTCCTGGATATGGGCGTGTTCTGGATTGTTATGAGGCTCCTTTTTCTATAAGTGATGGTAGGACTTGTCATTGTAGTGATGGAAGGAGATATAGAAGATGTTGTATGATTTCTGATAGTAATTGTGAATTTGACAAATCGGACGGATTTGATGAAGAGGACATTGCTGAGGCCATGATCAGTTTGATAAGGGAGGGTTTTGGAAGCCAGGAAAAAATTAAGTCATCCAAGAGAGTGGAAGTGGGAAACCAAAGAAAGTGTGGAGCGAAGGAGAGAAATTTGAGTTCATCTAGACGAGTAGAACTGGAGAAAAAGGTGAGAAGAGGTGTTGAGGAGAAAATTTTAAGTTCATTTGAAAAGATAAGAATAGACAGGGAAAGAGAGAGTAACAGTCAGCGAGAAAGAGAAGAGAGGAAAAGCAATAAGTTTGGTTCTTTAACTAGTAAACATAATAACAAAGTTGGATCAGTGGCAGTTGAGTTGAGAAAAGATGGATCTGGACTGAATGGTGATCAGTTAGTTCATTCAAGAGCTGATAATCAGAGTTTAAGAAAAGAAGGGTCTACTTGTTCATCTTATTATTCACTCTCCTCTTCTGGGGATATTGAGAGTGATGCTGAAGTTGAAGACAAGAATGTGCAATTTGTTGAAGAATCGTCCAGTGGCTACAGATACGACTCCGTGAGTGATATGGGAGAAAAATTAGATGGGCAGATCAAGGTTGCATTCAAGAGGCAAGCAGGCGATGAGAAGGGGCAAGAAGAGGAATCAGTGCTCCGTGATACTACAGTTGGGAATAGTGCCGATTGCCACTTGAGGAGGAACTCAGAGAATAAACTTAATGAAATGTCAACAACAGTAACATCCTCCATAAGTGGAACCTCTGATATGAACTCAAGATTGTCAAGGGCCAGGGAGAGTGGTTATGTAAGTACTTCAAGTTCCAAGAAGAAGTTTGTTGACAAGAAAGAGGAATCGAAAATGGCCGTGACTTTGAATGAGCAATCAAAACAATATGATGTATCAGGTAAGGAAGTGGGTGGTGTGTTTATAAATGAAGGGAAAAAACTTGCAGAAGTATCAGAAACAAGCCACAGTAGTGCAGAAGAAATATCTCGTTCTCATAAAAGACTAACCATTAAGAATGAAAACCTAGAATTAGATGCAAATCTTATCAAGAAAGCAAGCAACAATAATCATGAAATTGGTCAGCCTGTCCTTAAAGAAAAAAGTTCAAGACGAAGTTCGTCATTTCAACAACTTATGTCAGAAAATAGGAAAGCTGAGAGAGAAAGGACCTCTCATCTGACAAGCCAGTCTGATGCAAATGAAAGTACAGGTCTCCATCTAACTTCTAATCAAGAGGTTGAAGAAAGACATCATCAAATAGGAAATCATCCCACTGGAGAAGTGGAGTCGAGACAAAAGTTTCTTCATCTTGGTGTTATATCAGCAATCAAAGAGGGTAATACCAGCACCTCTGTTTCAAGTTCTGAAATTAGAACACAAAATGAGGAACAAAATGCAGCATCAGTTAATGCATCAAATTTTGTGGCTGAAGACATAAAGTCTTTGACAGATCAGAAAGCTTCTCAGAGAGTTATGTCCAGAAAAGGTTCCCGAGATGCCTCTAACAGTTCAGTGGTTCATGGTACCGGTAAAATATCTGCTACACATTCTGAAAAAACCTTTGAAAATAGAATCTTCAAGCAAGAAACTGATAAATCATTAGTGGAAAGAACTGTCAAGGAAACCATAATAATACATGGTCAAAATAATGATCGTGTGCTGCAAACTGAATCGGGAAAAGTGGTTAAAAATCATGTAGAAAAACCAAAAGTTCAAGGATCCATTAATTTAAGTTCCCAAAGTAGTTTTCAAGGGATTGGTGTGAATAATAAAGAAAATAAAAGGTCACAGGCAGCGTTAATGCCTCCTCCATTTCAGCTTGTAGCTAGAGATCCACTACGAATAGATTCTACTAGTGAAACGGCAAGCCAAGTAGTTTCCAGAAGAACATCAGTAAGCAGTTCAGGTGCTTCCTACATGCAGTCGGGAGGAAGTCCAGCTTTGGACCGTAAATCCTACCGAGGAAGTGGGGCTGATGAGAGTGTCGAGGATTCTGTGTACCTTATCACTCCTGATGATACTCTAGGTTCAGCTGACCGTTTAGAGAGATCATCTGCACAGTTTGTTGGTGAGTTCATGGAGAAGTCCAGGAATGAACTCTTAATTTCTGAAAACCGCAAGGAGAAAAACATCTCTGGGGTTGATTTACTACATGAAGAGAAGCAGGGAGAAAATAATTTGGTAGATTATCAAATGAAGGACCATGACCCAAGGCTCTCGTCTGGGATTTCTGGAACCAAGGGTCCTTCTGATGAAATGTGGCATGTAATTGACTCAACTACCGAGCAGCCTTCCAAAACTGATGATCCTGAGATTACTGGACATAGTGAGAATGCAATTGTCAAGAGAAGTGGCAAATCCTTGTGGAACGTCATTTCAGACATAGTTCATCTCCGTTGGCATTCACGTGCTGAAACATCTGAGTCAGCTTTAAGATCAGGTGGAAAAAATTCACCAAACGAGTCTGTTAGTAATGAAACATGGTTTTCCGGCCGTGAACATGAGGAGACTGATAATAAGAAAATGGAAAGAACCACAGTTTCTGAATTCACTTCTTCGGATCAATTGGAAGAACCAAATCCTTCTGTCCGAGGCCAAGATTTATCTGATGATAAGAAAACAGAAAGTAAATACTATGAAGTAGATACTCCATCTTCCCCAAATATAATAGAGACCAAGCCATCAGGTGGGACTTTGTTAGTTTCTGGAGAAGCGATCTTAACAGATGGTAGGAAGGTTGACGTTATTTCTTCTGGTTTGGATATAGAACAGTCATCATTACCAGTCTCTACCCAAGGCATAAGAGGATCTTCCATTATCCAAGAAATGTCTCATAGTGGTAAAAGTAATGCCTTTGCAAGCAGCTCTGCAGATCAGTTGGGGCATTCTTCTGATGCTACATTATCAGAGATATCAACAACTGGAACCAAGGATGGGGAAGTGAAACAAAGGAAGCTTCAAAGGAACAAGCAAGTTCTAAAAGATCGGTTTGATGAATGGGAAGAAGCATACCTACTCGAGACTGAGCAGCGAAAAATTGACGAAATGTTTATGAGGGAAGCCCTAGCTGAAGCCAAGAAGGCTGCTGATACTTGGGAAGTGCCTGTTGGAGCAGTGTTGGTGAAACATGGAAAAATTATTGCTCGTGGCTGCAACCTGGTTGAAGAGTTGCGAGATTCCACAGCCCATGCCGAAATGATTTGCATTCGGGAGGCTTCAAAGCAATTAAAGACATGGAGGCTTGCTGAGACAACTCTTTACGTGACACTTGAGCCTTGCCCGATGTGTGCTGGAGCGATACTTCAAGCACGAATCGAAAATCTTGTGTGGGGAGCACCAAATAAGCTTCTTGGAGCTGATGGCAGCTGGATCAGACTTTTCCCTGATGGTGGAGAGGGAAATGTCTCAGACCAGTCTGAGAAGCCTGCTGCACCCGTCCACCCGTTCCACCCGAAAATGAAAATCCGACGAGGTGTATTGGCATCGGAATGTGCTGATGTAATGCAACAATTCTTTCAGTTAAGGAGAAGAAAGAAGCAAAAGAAAGAAAACACTCCACCTCTAGCCATTACGCATCATCCATCAAAATTTATTACTAAGATGCATGACATTTTCCACATATTGTTCTGTTTGTAA 4056 41.05 MYNSYVSSTVYSIRSKGPLSHCFNERPISLNERCNGNPLHLPSSSSSCCSCCVCYTFPTHRVFVGPSMFYGPRQSTLLQWSISRRLMLGCRNRFCYTLPGYGRVLDCYEAPFSISDGRTCHCSDGRRYRRCCMISDSNCEFDKSDGFDEEDIAEAMISLIREGFGSQEKIKSSKRVEVGNQRKCGAKERNLSSSRRVELEKKVRRGVEEKILSSFEKIRIDRERESNSQREREERKSNKFGSLTSKHNNKVGSVAVELRKDGSGLNGDQLVHSRADNQSLRKEGSTCSSYYSLSSSGDIESDAEVEDKNVQFVEESSSGYRYDSVSDMGEKLDGQIKVAFKRQAGDEKGQEEESVLRDTTVGNSADCHLRRNSENKLNEMSTTVTSSISGTSDMNSRLSRARESGYVSTSSSKKKFVDKKEESKMAVTLNEQSKQYDVSGKEVGGVFINEGKKLAEVSETSHSSAEEISRSHKRLTIKNENLELDANLIKKASNNNHEIGQPVLKEKSSRRSSSFQQLMSENRKAERERTSHLTSQSDANESTGLHLTSNQEVEERHHQIGNHPTGEVESRQKFLHLGVISAIKEGNTSTSVSSSEIRTQNEEQNAASVNASNFVAEDIKSLTDQKASQRVMSRKGSRDASNSSVVHGTGKISATHSEKTFENRIFKQETDKSLVERTVKETIIIHGQNNDRVLQTESGKVVKNHVEKPKVQGSINLSSQSSFQGIGVNNKENKRSQAALMPPPFQLVARDPLRIDSTSETASQVVSRRTSVSSSGASYMQSGGSPALDRKSYRGSGADESVEDSVYLITPDDTLGSADRLERSSAQFVGEFMEKSRNELLISENRKEKNISGVDLLHEEKQGENNLVDYQMKDHDPRLSSGISGTKGPSDEMWHVIDSTTEQPSKTDDPEITGHSENAIVKRSGKSLWNVISDIVHLRWHSRAETSESALRSGGKNSPNESVSNETWFSGREHEETDNKKMERTTVSEFTSSDQLEEPNPSVRGQDLSDDKKTESKYYEVDTPSSPNIIETKPSGGTLLVSGEAILTDGRKVDVISSGLDIEQSSLPVSTQGIRGSSIIQEMSHSGKSNAFASSSADQLGHSSDATLSEISTTGTKDGEVKQRKLQRNKQVLKDRFDEWEEAYLLETEQRKIDEMFMREALAEAKKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMICIREASKQLKTWRLAETTLYVTLEPCPMCAGAILQARIENLVWGAPNKLLGADGSWIRLFPDGGEGNVSDQSEKPAAPVHPFHPKMKIRRGVLASECADVMQQFFQLRRRKKQKKENTPPLAITHHPSKFITKMHDIFHILFCL 1351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33235316 33239980 - ClG42_05g0251400.10 Clacu05g2514 250261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2514 1351 Gene3D Cytidine Deaminase, domain 2 1142 1328 - -
Clacu05g2514 1351 CDD nucleoside_deaminase 1170 1265 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 262 304 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 756 805 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 493 570 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 988 1002 - -
Clacu05g2514 1351 Coils Coil 465 485 - -
Clacu05g2514 1351 Pfam MafB19-like deaminase 1155 1265 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 535 549 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 947 1036 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 625 655 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 947 967 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 756 782 - -
Clacu05g2514 1351 Coils Coil 1123 1143 - -
Clacu05g2514 1351 Hamap tRNA-specific adenosine deaminase [tadA]. 1158 1316 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 550 564 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 586 607 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 968 987 - -
Clacu05g2514 1351 SUPERFAMILY Cytidine deaminase-like 1137 1318 IPR016193 GO:0003824(InterPro)
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 270 299 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 222 246 - -
Clacu05g2514 1351 FunFam tRNA-specific adenosine deaminase 1147 1327 - -
Clacu05g2514 1351 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1152 1274 IPR002125 -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 493 520 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 1004 1019 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 222 241 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 376 405 - -
Clacu05g2514 1351 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1132 1321 - GO:0009507(PANTHER)
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 1020 1035 - -
Clacu05g2514 1351 MobiDBLite consensus disorder prediction 342 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2514 K11991 - - csv:101215576 2201.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2514 Clacu-Chr5:33235316 Clacu06g1467 Clacu-Chr6:25600979 5.80E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32