Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2516 ATGGCGGCCGTATCACCGGCGCCTAATTCATCTCCGTCGCCGGCTTCTCCCTCCCCTCCATCTCCGCCGCCTCCGGTCGCATCTAATTCCCCACCTAGTACTCCGTCACTGTCGCCGCCGCAACAATCGCCTCCTCCGAATCCGTCTGACTCCGCGACTCCCACTTCATCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTGCTTCACCTCCACCTGCATCTGAAACTCCGCCGCCATCAACACCCGCATTGTCTCCTCCGCCGGCAACTCCACCATCAACTCCGTCCAATGCTCCACCCCCATCAACACCGGACCCTCCACCACCATCAGCAACCCCACCAGTAAGCTCCACTCCACCAACGCCATCTAATTCCCCACCAAATTCATCTCCACCTCCTGCAGCACAGCCTCCTCAATCCCCTCCACAATCATCAAAACCACCTGAAAACCCCCCTCCGCTGCCGCCGCCACCACCACAAGCAAACCCGCCGGATAATCCAGCGCCGCCGCCACAGCCCACAAACCCACCTGGGAATTCACCTCCTACGCCACCATCAGCACTGCCTCCAGCTACCTCACCTCCTTCCCCAGCATCCATACCTCCAAGAAATTCACCTCCACCCCCAAGGCTTACTCCACCTCCCGGTGAGCCCTCACTTTCAAGTCCTCCTCCCAGGTCATCACCGCCCCCATCTCCTCCACCACCGCCGCCGTCACATCTTTCTCCTCCATTACCGTCTAAACCCCCAACATTGCCGTCAGGAAATCGTACGGACGATGGTTCTGGTCCTATTGATGGAGGAGCAAACTCGAAATCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATCGCCATTGGAGTAGTGGCAGGAATTATAGTGCTTTCCATAATTGGGTTTGTTGTTTGGTACATCAGGAGGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGCTCCTCTCCTAAGTCGGAAACATCCCTTATGAAGGTCCATTCCACAGTTCATCAAGACATACATGCCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGTGGAATATACACTCCAAAAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATACGAAGAACTCTTCAAAGCAACAGATGCATTTTCTACTCAGAACCTTTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCTGGAATTCAAAGCTGAAGTTGAGATTATTGGTCGTGTACACCATCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCATCTTCATCTCAAAGGGGATGGCGAGCTCGTTCTGGAATGGACAAAGCGCATTAAGATCGCAGCTGGTGCAGCTCGGGGAGTTGCTTATCTTCATGAAGACTGCCACCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGATGAAAATTTTGAAGCTCGGGTTTCTGACTTTGGGCTTGCTAGATTAGCTCTCGATGAACAAACTCATATAACAACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCGAGTGGAAAGTTAACTGAGAGGTCAGATGTATATTCTTTTGGAGTTGTACTTCTTGAGCTGATTACTGGTCGAAAGGCTGTGGACGCATCCCAACCAATGGGGAATGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTCGACAGCCAAGATTTCGAAAAATTGGTGGACCCAAGGCTTGAAAGGAACTACGTCGAGAGTGAAATGTTGGGGATGATAGGAATAGCTGCTGCTTGCGTGCGGCACGCGTCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCCACAGCAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAATCTGCTGAAATTAGATTTTTCCGAATGCTGGCCTTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA 2154 50.88 MAAVSPAPNSSPSPASPSPPSPPPPVASNSPPSTPSLSPPQQSPPPNPSDSATPTSSPPPPSRQPSAASPPPASETPPPSTPALSPPPATPPSTPSNAPPPSTPDPPPPSATPPVSSTPPTPSNSPPNSSPPPAAQPPQSPPQSSKPPENPPPLPPPPPQANPPDNPAPPPQPTNPPGNSPPTPPSALPPATSPPSPASIPPRNSPPPPRLTPPPGEPSLSSPPPRSSPPPSPPPPPPSHLSPPLPSKPPTLPSGNRTDDGSGPIDGGANSKSNSNGGISSGGVIAIGVVAGIIVLSIIGFVVWYIRRPRKNDSGRGGYIMPSSLGSSPKSETSLMKVHSTVHQDIHASGSGSGSGSGGIYTPKELGGLGSSRPLFTYEELFKATDAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGDGELVLEWTKRIKIAAGAARGVAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLARLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGNESLVEWARPLLNHALDSQDFEKLVDPRLERNYVESEMLGMIGIAAACVRHASAKRPQMGQVVRAFDSLATADLSNGMRFGESQAFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33270190 33273901 - ClG42_05g0251600.10 Clacu05g2516 250263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2516 717 Gene3D Phosphorylase Kinase; domain 1 365 463 - -
Clacu05g2516 717 Gene3D Transferase(Phosphotransferase) domain 1 464 680 - -
Clacu05g2516 717 ProSiteProfiles Protein kinase domain profile. 388 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2516 717 FunFam proline-rich receptor-like protein kinase PERK8 464 677 - -
Clacu05g2516 717 MobiDBLite consensus disorder prediction 1 277 - -
Clacu05g2516 717 ProSitePatterns Protein kinases ATP-binding region signature. 394 416 IPR017441 GO:0005524(InterPro)
Clacu05g2516 717 MobiDBLite consensus disorder prediction 10 251 - -
Clacu05g2516 717 FunFam Proline-rich receptor-like protein kinase PERK8 361 463 - -
Clacu05g2516 717 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 247 695 IPR047117 -
Clacu05g2516 717 SMART serkin_6 388 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2516 717 Pfam Protein kinase domain 389 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2516 717 CDD TM_EGFR-like 280 312 - -
Clacu05g2516 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2516 717 CDD STKc_IRAK 394 666 - -
Clacu05g2516 717 SUPERFAMILY Protein kinase-like (PK-like) 371 661 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0788 Clacu-Chr1:8536825 Clacu05g2516 Clacu-Chr5:33270190 8.30E-62 dispersed
Clacu03g0413 Clacu-Chr3:4544910 Clacu05g2516 Clacu-Chr5:33270190 1.60E-56 dispersed
Clacu05g1087 Clacu-Chr5:9710322 Clacu05g2516 Clacu-Chr5:33270190 2.20E-70 dispersed
Clacu05g1165 Clacu-Chr5:10719003 Clacu05g2516 Clacu-Chr5:33270190 1.30E-63 dispersed
Clacu05g2516 Clacu-Chr5:33270190 Clacu11g0675 Clacu-Chr11:6517974 2.00E-147 dispersed
Clacu07g1332 Clacu-Chr7:28148286 Clacu05g2516 Clacu-Chr5:33270190 2.00E-54 dispersed
Clacu07g1635 Clacu-Chr7:30916047 Clacu05g2516 Clacu-Chr5:33270190 1.10E-59 dispersed
Clacu10g0307 Clacu-Chr10:3957363 Clacu05g2516 Clacu-Chr5:33270190 5.40E-44 dispersed
Clacu11g0589 Clacu-Chr11:5622503 Clacu05g2516 Clacu-Chr5:33270190 1.30E-39 dispersed
Clacu11g1898 Clacu-Chr11:30011244 Clacu05g2516 Clacu-Chr5:33270190 4.30E-64 dispersed
Clacu05g2516 Clacu-Chr5:33270190 Clacu05g2521 Clacu-Chr5:33327045 1.60E-68 proximal
Clacu01g0114 Clacu-Chr1:1043148 Clacu05g2516 Clacu-Chr5:33270190 6.60E-43 transposed
Clacu01g2412 Clacu-Chr1:34709858 Clacu05g2516 Clacu-Chr5:33270190 6.00E-46 transposed
Clacu02g2300 Clacu-Chr2:36063327 Clacu05g2516 Clacu-Chr5:33270190 2.20E-29 transposed
Clacu01g0596 Clacu-Chr1:6164938 Clacu05g2516 Clacu-Chr5:33270190 2.30E-42 wgd
Clacu03g0752 Clacu-Chr3:8386151 Clacu05g2516 Clacu-Chr5:33270190 3.90E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73599 PF00069 Pkinase 3.40E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2516 - - - 0.0