Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2521 ATGGTTCAAATGGGAATTATTAGAATAAAAGTTTCCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATGGAATTCTTCAGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTTCAAGCCTTGATGGCCATTAAAGCTGCTTTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAATTTGTCATTAGCTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCCTGTCGCCGAGCATCGGAAATTTGACGAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCACTTCTCTTTCCCATCTCAAGAGTCTTCAATACTTGAGGCTTAATAACAACAGTCTTTCTGGAGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTTAGTGGCCCATTGCCCAGATTGCTAGCTAAAACATACAACCTTGCTGGGAATTCTCTCATTTGCTCACCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTTTTATTTGCAGTCAATACACCTCAAAAGCCACAACCTTCTGGGAGATCCAAGGGCCAAAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGTTAACTATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGACCAAAGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATCTTCCAGTTCAGAGAGCTTCAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGATTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACGGTTATAGCTGTGAAGAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGGAACCTCCTCCGTCTCTATGGGTTCTGTATGACAACCACAGAGAGACTTTTGGTTTACCCCTATATGTCTAACGGCAGTGTTGCATCCCGTCTCAAAGCAAAGCCAGCTCTGGATTGGAGCACCAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGGTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGGGATGTCAAGGCAGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGATTGGCAAAGCTGTTGGATCACAGAGATTCGCATGTGACCACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTGTTTGGATATGGAATTCTTCTTCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCTAATCAGAAAGGAGCCATGCTTGATTGGGTCAAGAAAATTCACCAAGAAAAGAAGCTTGAAATACTAGTCGATAAGGATCTGAGGAACAATTACGACAGGATTGAACTTGAAGAAATGGTTCAAGTAGCTCTTTTATGCACACAGTATCTTCCAACTACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAATTCTCCTCGTCAGAGCGATACTCTGATCTAACAGATGATTCTTCCCTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1887 42.98 MVQMGIIRIKVSIFFFFFFFFFLWNSSVNGLLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQKPQPSGRSKGQKLALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33327045 33330133 + ClG42_05g0252100.10 Clacu05g2521 250268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2521 628 Gene3D Transferase(Phosphotransferase) domain 1 385 597 - -
Clacu05g2521 628 SUPERFAMILY L domain-like 40 201 - -
Clacu05g2521 628 Gene3D Ribonuclease Inhibitor 37 218 IPR032675 -
Clacu05g2521 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2521 628 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Clacu05g2521 628 Pfam Protein tyrosine and serine/threonine kinase 311 577 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2521 628 Gene3D Phosphorylase Kinase; domain 1 277 384 - -
Clacu05g2521 628 FunFam Putative LRR receptor-like serine/threonine-protein kinase 37 218 - -
Clacu05g2521 628 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524(InterPro)
Clacu05g2521 628 FunFam Somatic embryogenesis receptor kinase 1 277 384 - -
Clacu05g2521 628 Pfam Leucine Rich Repeat 177 196 IPR001611 GO:0005515(InterPro)
Clacu05g2521 628 Pfam Leucine Rich Repeat 104 125 IPR001611 GO:0005515(InterPro)
Clacu05g2521 628 Pfam Leucine Rich Repeat 152 174 IPR001611 GO:0005515(InterPro)
Clacu05g2521 628 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515(InterPro)
Clacu05g2521 628 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 628 - -
Clacu05g2521 628 SUPERFAMILY Protein kinase-like (PK-like) 286 578 IPR011009 -
Clacu05g2521 628 FunFam Somatic embryogenesis receptor-like kinase 1 385 597 - -
Clacu05g2521 628 SMART serkin_6 308 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2521 628 ProSiteProfiles Protein kinase domain profile. 308 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0744 Clacu-Chr1:8002800 Clacu05g2521 Clacu-Chr5:33327045 1.00E-232 dispersed
Clacu05g2521 Clacu-Chr5:33327045 Clacu11g0656 Clacu-Chr11:6304090 3.60E-230 dispersed
Clacu05g2516 Clacu-Chr5:33270190 Clacu05g2521 Clacu-Chr5:33327045 1.60E-68 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73600 PF00069 Pkinase 1.10E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2521 - - - 0.0