Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2525 ATGGCAATCTCAAATAGAGTTTATGAAGTGATGATGATGGTTTGTGTTTTCTTTGTTGTGACCCACAGCTTGTTTGAAACAGGGGAGCCTCCATTGACATTGGATTACTATGCCAAAACCTGTCCCAATGTGTTGCAAGTTGTGAGGAAAGAAATGGAGTGTGCAGTGCTTTCTGAACCACGTAATGCAGCTTTTGTTGTCCGATTACACTTTCACGACTGCTTTGTTCAGGGATGCGACGGGTCGATTCTGCTGGACGACACTATAACATTAGAGGGAGAAAAAAAGGCTTCCAACAACATACACTCCCTCAAAGGCTTTAGAATCATTGATAGGATAAAGAACAGCCTTGAATCAGAATGTCCTGGGATTGTTTCTTGTGCAGATATACTCACTATTGCAGCCAGGGATGCAGTGATTCTGGTGGGTGGCCCTTACTGGGAGGTTCCTCTTGGAAGAAAGGATTCCACAACTGCAAGTTATGAACTTGCAAACACAAATCTTCCCTCTGCCAACGAGGGCCTTCTCAGCATCATCTCCAAGTTTCTTTATCAGGGTCTCTCTGTCACTGACATGGTAGCTTTATCAGGAGCGCACACGATCGGAATGGCGAGGTGCGAGAATTTCAGAGAAAGGATTTATGGGGATTTCGAAGCGACTTCAGATACAAACAACCCGATTTCGAAGTCGTATATTGAGAAGTTGAGGTCGATTTGCCCCCAAGTTGGGAAAGCAGCAGAGAACAACATAACAGCAATGGACAATGTGACACCAGAGCTGTTTGACAACTCTTATTTCCACATGTTGATGAGAGGAGAAGGGGTTTTGAAATCAGACCAAGAATTGTATTCAAGCCTTTTGGGAATGGAAACCAAGGCATTGGTGAAGAAATATGCTGCTGATCCACTTGCTTTCTTTCAGCAATTCTCTGATTCCATGGTGAAGTTGGGAAATATCACCAATTCTGATAGCTTTTTCACTGGGGAAGTTAGGAAAAATTGCAGGTTTATCAACACATAA 1020 43.33 MAISNRVYEVMMMVCVFFVVTHSLFETGEPPLTLDYYAKTCPNVLQVVRKEMECAVLSEPRNAAFVVRLHFHDCFVQGCDGSILLDDTITLEGEKKASNNIHSLKGFRIIDRIKNSLESECPGIVSCADILTIAARDAVILVGGPYWEVPLGRKDSTTASYELANTNLPSANEGLLSIISKFLYQGLSVTDMVALSGAHTIGMARCENFRERIYGDFEATSDTNNPISKSYIEKLRSICPQVGKAAENNITAMDNVTPELFDNSYFHMLMRGEGVLKSDQELYSSLLGMETKALVKKYAADPLAFFQQFSDSMVKLGNITNSDSFFTGEVRKNCRFINT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33349449 33352932 - ClG42_05g0252500.10 Clacu05g2525 250272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2525 339 Gene3D - 36 338 - -
Clacu05g2525 339 PANTHER PEROXIDASE 72-RELATED 12 337 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Plant peroxidase signature 311 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Plant peroxidase signature 252 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Plant peroxidase signature 268 285 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 FunFam Peroxidase 169 316 - -
Clacu05g2525 339 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Clacu05g2525 339 SUPERFAMILY Heme-dependent peroxidases 32 338 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 ProSiteProfiles Plant heme peroxidase family profile. 31 338 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Clacu05g2525 339 Gene3D Peroxidase, domain 2 169 316 - -
Clacu05g2525 339 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Haem peroxidase superfamily signature 254 269 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 FunFam Peroxidase 35 176 - -
Clacu05g2525 339 Pfam Peroxidase 48 301 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu05g2525 339 CDD secretory_peroxidase 32 337 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2525 Clacu-Chr5:33349449 Clacu09g1264 Clacu-Chr9:13352646 5.60E-76 dispersed
Clacu05g2525 Clacu-Chr5:33349449 Clacu01g2054 Clacu-Chr1:32336989 7.30E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2525 K00430 - csv:101216779 607.446