Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2529 ATGGCGTCTTCCTCCTTATCCACCAAGCGCGAAATAACCATGGCGTCTTCTCCGACTCCCATCTCTCCACTATCTTTTCCCAATCCAATACCAAGATCAAGATCAAAACCAAAACCAATACCAAACAAACCGCCGTCTTCATTGCCTCCTGCCTTGAACCCCAACCCCAAATCTCCGCCCAAGGAACTTTACTTCAACCGCGATGGCTCTACCTTTAAAAAACTTCAGGTCGGGGTTAATCTGGTGGCGGATCTGGTGGGTGTTACATTAGGGCCGAAGGGAAGGAATGTGGTACTTCAGAACAAATATGGACCGCCCAAGATAGTCAACGACGGTGAAACTGTCCTGAAAGAGATTGAACTGGAAGACCCTTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTGATTGCCGAGGGTATGAAGGTTATTTCGTCTGGCATGAATCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAAAGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAGATCATGAGATAGCACATGTGGCCGCAGTTAGCGCAGGGAATGATTATGCTGTAGGAAATTTGATCTCAGATGCCTTACGTCAAGTTGGAAGGAAGGGAGTCGTCCAAATTGAAAAAGGGAAGAGTATCGATAACAGTCTGCAAATTGTTGAAGGGATGCAATTTGACCGTGGATATTTATCTCCATACTTCGTTACTGATAGAAAGAAGATGGTAGTAGAATTTCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATCTCAGATCCAAAGGAGATGTTTAAAATATTGGACAGTGCTGTGAAAGAGAAATACCCAATTGTGATATTGGCAGAGGGCATTGAGCAGGAAGCTCTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTACTTAGATGACATAGCCACCTTAACTGGAGCTACTGTGGTTAGAGAAGATAGTGGATTCACGTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTAGTAAGGTTGTTATATCAAAACATTCCACACTAATAGTTACAGATGGGAATACTCGGGAAGCTGTTCGGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAATTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGGCGAATTGCAATACTTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGACGCTTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACGAAGGTGGATGCTATAAAGAAAGTCCTGGAAAATGACGAACAGATGATTGGAGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAATGTTGTAATAGATAAGGTTCTAATCAACAATGATATGGATTATGGATATAATGCGGCCACAGACCGTTACGAGGATCTAATGAAAGCTGGAATCTTGGACCCTTCAAAGGTTGTTAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTAGTTGATATGAAGGAACCAGAACCCATACCAAGAAGAACACCGATGCCAATCTCAGACAAATGGGTCTCTAGCTCCACGGACAAGATCAGAGTATGTGGAGAGTATTCTCAAGTTGAAGGGATTCAATGGGAGTACTGTTTTAAGACAGCTGCACGGTACTTTAGTCACCAGACAAATGGGTCTCGTCTCTGGAGCCACCATTCAATGGGCATGTAG 1962 43.58 MASSSLSTKREITMASSPTPISPLSFPNPIPRSRSKPKPIPNKPPSSLPPALNPNPKSPPKELYFNRDGSTFKKLQVGVNLVADLVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMNPVQIARGIEKTAKALVSELKLMSREVEDHEIAHVAAVSAGNDYAVGNLISDALRQVGRKGVVQIEKGKSIDNSLQIVEGMQFDRGYLSPYFVTDRKKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDSGFTLEKTGKEVLGSASKVVISKHSTLIVTDGNTREAVRKRVLQIQKLMENTEENFPKKILNERIARLSGRIAILQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKKVLENDEQMIGAEIFKRALSYPTKLIARNAGVNGNVVIDKVLINNDMDYGYNAATDRYEDLMKAGILDPSKVVRCCLEHAASVAKTFLTSDAVVVDMKEPEPIPRRTPMPISDKWVSSSTDKIRVCGEYSQVEGIQWEYCFKTAARYFSHQTNGSRLWSHHSMGM 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33374992 33380043 + ClG42_05g0252900.10 Clacu05g2529 250276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2529 653 MobiDBLite consensus disorder prediction 1 21 - -
Clacu05g2529 653 Gene3D - 196 468 IPR027410 -
Clacu05g2529 653 ProSitePatterns Chaperonins cpn60 signature. 463 474 IPR018370 GO:0005524(InterPro)|GO:0006457(InterPro)
Clacu05g2529 653 MobiDBLite consensus disorder prediction 1 65 - -
Clacu05g2529 653 CDD GroEL 61 584 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Clacu05g2529 653 Gene3D - 73 583 IPR027413 -
Clacu05g2529 653 Coils Coil 397 417 - -
Clacu05g2529 653 SUPERFAMILY GroEL apical domain-like 243 434 IPR027409 -
Clacu05g2529 653 FunFam 60 kDa chaperonin 250 431 - -
Clacu05g2529 653 SUPERFAMILY GroEL equatorial domain-like 69 582 IPR027413 -
Clacu05g2529 653 Gene3D GroEL 250 431 IPR027409 -
Clacu05g2529 653 PRINTS 60kDa chaperonin signature 326 349 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Clacu05g2529 653 PRINTS 60kDa chaperonin signature 456 477 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Clacu05g2529 653 PRINTS 60kDa chaperonin signature 142 169 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Clacu05g2529 653 PRINTS 60kDa chaperonin signature 86 112 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Clacu05g2529 653 PRINTS 60kDa chaperonin signature 408 433 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Clacu05g2529 653 Pfam TCP-1/cpn60 chaperonin family 82 585 IPR002423 GO:0005524(InterPro)
Clacu05g2529 653 SUPERFAMILY GroEL-intermediate domain like 200 263 IPR027410 -
Clacu05g2529 653 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 59 588 IPR001844 GO:0006457(PANTHER)|GO:0009570(PANTHER)|GO:0042026(InterPro)|GO:0140662(InterPro)
Clacu05g2529 653 MobiDBLite consensus disorder prediction 22 57 - -
Clacu05g2529 653 NCBIfam chaperonin GroEL 61 587 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2529 K04077 - - csv:101209342 999.579
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1504 Clacu-Chr3:28607648 Clacu05g2529 Clacu-Chr5:33374992 1.70E-217 dispersed
Clacu05g2529 Clacu-Chr5:33374992 Clacu06g0752 Clacu-Chr6:8796848 1.20E-122 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67