Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2531 ATGTTGGATCATATCAACAAAACTGGTAACTCAGAGCAAGAGCATGCCAACATTAATGCTCTCTGGGCATCGCTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACATATTTTTGCATAGCTCCTGGATCAAGATCATCCCCTCTTGCCATAGCTGCTGCAAGTCATCCCCTTATGACATGTATTGCCTGCTTTGATGAACGCTCTCTTGCTTTTCATGCTATTGGGTATGCCAAAGGATCTCATAGCCCAGCAGTTGTAATCACATCGTCAGGCACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCTAGTCAAGATTTTCTTCCTCTTTTATTGCTTACAGCTGACCGTCCCCCGGAGCTACAGGACGCAGGAGCAAATCAAGCAATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAATCTTCCTGCTCCAACTGATCAAATTCCCGCCAGAATGGTACTTACCACTCTCGATTCTGCTGTACATTGGGCAACCTCTTCACCCTGTGGCCCCGTTCACATAAACTGTCCATTTAGAGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTGCTTAAATGGATTACACATTTGGTTATCAAGCACTGAAGTTTTTACCAAATATATTCGACTTGAAGCGTCTCCAATGTCTATTGATTCTTTTGGTCAAATGGCTGAGGTTTTGAAAGTAATCCGTGGAGCCAGGAAGGGAATTCTACTTCTTGGATCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTATTGGCCAAACATATTTCATGGCCTATAGTGGCTGATGTATTGTCTGGTTTACGATTAAGAAAGAGTTTGTCTGCATTCCTAGAAATGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCACACTTTGCTTTCTGAATCGGTGAGAAAATGGCTAAATTTTGACGTGATTATTCAGATTGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGATGCTTGAGGACTGCAGTCCCTGTTCATACATCATGGTTGATAAGCATCCAGGTCGTCATGATCCATCACATATTGTAACCCATAGAATTCAAAGCACCGTCTTAGAATTTGTTGGTTGTTTACTTAAAGCTGATTTTCCTCTCAATAGGAACAAGTGGACTGCTACTTTACGAGCATTGAATTTGATGGTTGAATGGGAAATACAATTTCAAATTTCTGCTAACTACTCTCTATCTGAGCCACAAGTTGCTCAGGTAATCTCAGAAGCACTTCCATTTGATTCTGTTTTGTTCCTGGGGAACAGCATGCCAATTCGTGATGTAGATATGTATGCATATGGCTGGTCAAAATGCAACGACAGTGTAGCGGCTAGACCATTAAACTTACGACTGCCATTTTGCTGGATATGGACTTCTGGAAATAGGGGAGCCAGTGGTATTGACGGACTTCTTAGCACAGCAGTTGGTTTTTCTGTTGGATGCAACAAACGAGTGCTTTGTGTCGTTGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTAGCAATTTTGAACCAGAGGATGACGAGGAAACCTGTGACTGTAGTTGTAATCAATAATAATGGTGGGGCAATCTTCAGTCTCCTTCCTATCAAGGACAAAGTAGAGGCAGCAATACTAGACCAATTCTTCCACACCTCTCACAAGGTTTCACTCCGAAGCCTATGCGTGGCACATGGCTTGAAGCATTTACATGTACGGACAAAGATGGAACTTCAAGATGCTTTATTTATGTCTCATCATGAAGAAAATGATTGCATAATCGAGGTCGAAAGTTCCATTGATGCCAATACTGACTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGAGCATGGTTTACGCATCTTTTCAAGGCTTTATTCTGAAGAATCTGTTTCACCTGGACTCTTCCTCTGCAAGATAAGTAGAATGGAATGCACATTGTTCAGAATCCCACTATGTGCTCCACCTACAACTTCATCTGGTTCTATTGATCAAGTCAGTCGGAAGTTCTTCAGAGAAGGTTTTATTTTGTCTTTGTTTCTGGAGGACGGGAGTCTTGGCCTTGGTGAGGTTTCACCCCTTGACATCCACAGAGAGAACCTACTAGATGTGGAAGAGCAACTTAAGTGTCTCATTCATATATTAAAGGGAGCCGAGATCAACAGCTCCATTCCTCTACTAAGGGGCTCATTTTCATCTTGGATTTGCCATGAACTGGGAATACCACCAAGTTCAATCTATCCAAGTGTTAGATGTGGTTTGGAAATGGCTGTTCTCAATGCCATAGCAGGGAGAAAAGGTTGCAGCTTGTTAGATGTACTCCAGCATCGGTTAGATGAAGAAAAGAACTTGACAACTTCATCAAAAGTTCAAATTTGTGGGCTGTTGGATTCTGGTGGAACTCCATCTGAGGTTGCTCGTGTTGCTAAGACACTGGTCGAAGAAGGATTTCCTGCTATCAAGTTAAAGGTAGCCCGACAACGGAATGTCATGTATGATGCTGCAGTTGTACAGGAAGTAAGGAAAAAGCTTGGCAACCAAATTGAACTCCGCGTTGATGCCAATCGGAACTGGAGCTATGAAGAAGCTATTTTATTTAGCTCTTTGGTGAAGGACTGTGGCCTGCAATATATTGAGGAACCAGTCATGGATGAAGATGCTATTATTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTGTCGATCATATTCAAGACAATCCCGTGAAAGAACTAGCGAAGTATGCTCATCCAGGAATTGTTGCTATAGTTATAAAACCAAGTGTCATTGGCGGATTTGAAAATGCAGCATTAGTAGCGAGGTGGGCACAACAACATGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCTGGATATATACACTTATCCTGTTATCTGGACCTTCAGAATGCAGATGTTAGAAAACTGATGAATATTCAACCAGCCCCATCTATAGCCCACGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTAACTGTCAATCCTCTCAGAATTCGCCGTGACCCTTATAGCGGCATTATTGAAGCATCTGTTGCTGAGGCTAATCGACTTCTAAATAGTTTTGAAATCAACCAGAAGTTTGTTTGTAGAAAATTTACTGAAGAGCAAGTTCGTATGTTCAAATTAAGTGTAGACTTAAAGGGGTTCTCTTATTCAATAAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAATGTGCTCTTCTTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGATTAAAATCATGAAAGGCGTCTCAGGTTCAGCGAGATGCATTTCTCTTGACCTTCCTGGTCACGGGGAATCAACGACCCAAAAGAATGATTGTGATGTTCATGGTTTGGAGGAACCAAGTTTTTCAATGGAGGTTGTTGCTGGTCTACTGTATAAGTTGATTCATCATCTTGCTCCTGGTAAAGTTATAGTTAACCTTGTAGGGTATTCAATGGGGGCTAGGATTGCAATGTACATGGCCCTGAGATTTGGTGATAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCCGGATTAAAAGACAAGATGGCAAGAAGAATCCGCAGAGTTAAAGATGATTCTAGAGCACGAATCCTTAAGGTCTATGGCTTACAAAGCTTTCTTGAGGCGTGGTATTGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGCCGATTGAAGCACGATGATGTGCAGCATCTTGCAAAAGCTCTATCTGATTTAAGCATTGGAAGGCAGCCGCAATTGTGGGATGAATTAAAATACTGCAAAACACCACTTTCATTCATTGTTGGGGAGAAGGATACAAAATTCAAGACAATTGCACAGAAAATTCTATCTCAAATTGATATGGACAAGAAGATCAAAGACGAACCAATTGTTGACCTCCATGAAATAGTTGAGATCCCGGACTCAGGACATGCTGTCCATCTGGAGAATCCTCTTGCTGTTATCAATGCATTAAGTAGATTTCTAATAAGGAGTAGAACACACTGCTCTTACAATTCGGATTTCCCAGGCCAAGTCGCAATTACGCATGAGACCCGCCTTCTGTAA 4170 41.44 MLDHINKTGNSEQEHANINALWASLIVEECSRLGLTYFCIAPGSRSSPLAIAAASHPLMTCIACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPAPTDQIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWLSSTEVFTKYIRLEASPMSIDSFGQMAEVLKVIRGARKGILLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSAFLEMENNFFFVDHLDHTLLSESVRKWLNFDVIIQIGSRVTSKRVSKMLEDCSPCSYIMVDKHPGRHDPSHIVTHRIQSTVLEFVGCLLKADFPLNRNKWTATLRALNLMVEWEIQFQISANYSLSEPQVAQVISEALPFDSVLFLGNSMPIRDVDMYAYGWSKCNDSVAARPLNLRLPFCWIWTSGNRGASGIDGLLSTAVGFSVGCNKRVLCVVGDVSFLHDTNGLAILNQRMTRKPVTVVVINNNGGAIFSLLPIKDKVEAAILDQFFHTSHKVSLRSLCVAHGLKHLHVRTKMELQDALFMSHHEENDCIIEVESSIDANTDFHSVLRKFTCQAVEHGLRIFSRLYSEESVSPGLFLCKISRMECTLFRIPLCAPPTTSSGSIDQVSRKFFREGFILSLFLEDGSLGLGEVSPLDIHRENLLDVEEQLKCLIHILKGAEINSSIPLLRGSFSSWICHELGIPPSSIYPSVRCGLEMAVLNAIAGRKGCSLLDVLQHRLDEEKNLTTSSKVQICGLLDSGGTPSEVARVAKTLVEEGFPAIKLKVARQRNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIIKFCEESGLPVALDETVDHIQDNPVKELAKYAHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLDLQNADVRKLMNIQPAPSIAHGLGTYRWLEEDVTVNPLRIRRDPYSGIIEASVAEANRLLNSFEINQKFVCRKFTEEQVRMFKLSVDLKGFSYSIKVLEVGQRTNDNVLFFLHGFLGTGEDWIKIMKGVSGSARCISLDLPGHGESTTQKNDCDVHGLEEPSFSMEVVAGLLYKLIHHLAPGKVIVNLVGYSMGARIAMYMALRFGDKIGRAVIISGSPGLKDKMARRIRRVKDDSRARILKVYGLQSFLEAWYCGELWKSLREHPHYSQIIASRLKHDDVQHLAKALSDLSIGRQPQLWDELKYCKTPLSFIVGEKDTKFKTIAQKILSQIDMDKKIKDEPIVDLHEIVEIPDSGHAVHLENPLAVINALSRFLIRSRTHCSYNSDFPGQVAITHETRLL 1389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33386124 33398575 + ClG42_05g0253100.10 Clacu05g2531 250278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2531 1389 Gene3D - 651 789 IPR029017 -
Clacu05g2531 1389 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 24 135 IPR012001 GO:0030976(InterPro)
Clacu05g2531 1389 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 16 623 IPR004433 GO:0009234(InterPro)|GO:0030976(InterPro)|GO:0070204(InterPro)
Clacu05g2531 1389 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 16 196 IPR029061 -
Clacu05g2531 1389 CDD TPP_PYR_MenD 24 185 - -
Clacu05g2531 1389 SUPERFAMILY Enolase N-terminal domain-like 651 786 IPR029017 -
Clacu05g2531 1389 Gene3D - 14 210 - -
Clacu05g2531 1389 Pfam Enolase C-terminal domain-like 817 988 IPR029065 -
Clacu05g2531 1389 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 459 592 IPR011766 GO:0003824(InterPro)|GO:0030976(InterPro)
Clacu05g2531 1389 Pfam alpha/beta hydrolase fold 1096 1207 IPR000073 -
Clacu05g2531 1389 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 862 893 IPR018110 GO:0009063(InterPro)
Clacu05g2531 1389 Gene3D alpha/beta hydrolase 1087 1363 IPR029058 -
Clacu05g2531 1389 Gene3D - 790 1034 IPR036849 -
Clacu05g2531 1389 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 412 605 IPR029061 -
Clacu05g2531 1389 NCBIfam o-succinylbenzoate synthase 684 994 - -
Clacu05g2531 1389 CDD TPP_SHCHC_synthase 413 608 - -
Clacu05g2531 1389 SMART MR_MLE_2 814 910 IPR013342 -
Clacu05g2531 1389 SUPERFAMILY alpha/beta-Hydrolases 1083 1363 IPR029058 -
Clacu05g2531 1389 Gene3D - 412 622 - -
Clacu05g2531 1389 Pfam Middle domain of thiamine pyrophosphate 202 434 IPR032264 -
Clacu05g2531 1389 SFLD muconate cycloisomerase 652 1029 - -
Clacu05g2531 1389 SFLD o-succinylbenzoate synthase 652 1029 - -
Clacu05g2531 1389 SUPERFAMILY Enolase C-terminal domain-like 810 1030 IPR036849 -
Clacu05g2531 1389 SUPERFAMILY DHS-like NAD/FAD-binding domain 178 395 IPR029035 -
Clacu05g2531 1389 Gene3D - 229 405 - -
Clacu05g2531 1389 NCBIfam 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 22 493 IPR004433 GO:0009234(InterPro)|GO:0030976(InterPro)|GO:0070204(InterPro)
Clacu05g2531 1389 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 1 1367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2531 K14759 - - csv:101217012 2550.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1016 . . . . . . . . Cmo04g01638 . . . Car04g01619 . . . Cpe01g01391 Bhi07g01424 . . . . . . Cla05g02365 Cam05g2535 Cec05g2564 Cco05g2603 Clacu05g2531 Cmu05g2391 Cre05g2507 . . . . Lsi04g00326 . Chy10g01084 Cme10g00326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37