Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2543 ATGAGAGCCTTTTCGGTTTCTAAAGTGATTAGTCAAAGTTCATGGTGTCTAAAAGTTAACGTTCATTCAAGGACAACTGTAAGTTGTTCATCGAGGATCCTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCTCGGCTTGAAGCGGAATCCGTCACTACCTCCTTCGTTCTGGACCAGAATGACCCAGTTTGTGAAATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAACTGTTGTTTCTACTTTGAGCGAAACTGTAGTGGATGAGGTTCTTGATAGCTTGAGAACTCAGAATCCTGATGTTGCTGTGGCTTTTTTCTATTTGTTAAGAAATGAGTACGGATTTCGGCATTCCAGATTCTCCCAGTTTGCTGTTTCTCATATTTTAGCGGGTAAAGGACGATTCAAGGAGTTGCATTCCGTTATAAAGCAATTGCTTGAGGAGCAAGGGTCTGGTTCTGCATCTACATGTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATAGTGTGGTATGGGATACGCTGGCATTTGTATACTCTAGACATGAAATGATCCATGATGCCCTCTTCGTCATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATATTATGTGGAATCTATACAGTGAGATAAAAGTTAGAGCTCCCCATAGTGAATATACTAACTCAATACTTATGCACGGCCTATGTGAGCAATCCAAGTTACAAGATGCAATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCATAATGTCAAAGTTTTGCAAAGTGGGGCTAATAGATGTTGCGAGGTCATTTTTTTGTTTGATGGTAAAAAATGGACTGCTTCCTGATTCCTACAGTTATAATATTCTTGTTCATGGGTTATGTGTAGCAGGTTCCATGGACGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAACCTGATGTAGTAACATACAACACACTCGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCAGAAAGTTGTCCAGAAAATGTTGCTGAAAGGTCTAAATCCGGATCTTGTGACATATACAATACTGATGTGTGGACATTGTCAAATGGGAAATATTGAGGAAGCTCTTAAACTGCGGCAAGAAACTCTTTCAAGGGGGTTTAAGTTGAATATCATTTCCTACAGCGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGTATAGAAGAAGCATTGACATTGCTTGATGAAATGGAAACTTTACGTTTAAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTGCAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCAAACTACTTTGCTCAACGTGCTGTACTGTTAGGTCTATTTGAGAATGGAAATATATCTGAGGCAAGAAAGTATTTTGATGCTTTGACTCACATGGATCTGATAGAGGATGTTATTTTGTATAATATTATGATTGATGGTTACGTAAGACTTGGTGATATTGCTGAGGCTATGCAGCTATATTGCAGAATGATTGAAAGGGGGATCACTCCAAGTGTTGTCACTTTCAACACTCTTATCAAAGGATTCTGCAGAATGGGAGACCTAGTGGAGGCTCGAAAGATGTTGGAAGTTATTAGGTCGAATGGATTGCTACCTAGTGTGGTAACTTATACTACCCTAATGAATGCGTACTGTGAAGTGGGAAACATGCAGGAAATGTTTCATCTTCTTCATGAGATGGAGGCAAACGCTGTTGTTCCAACTCATGTAACTCATACTGTACTAATCAAAGGACTTTGCAGACAGAATAAGATGCATGAGGCCCTCCAGTTGCTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCCGGTCACATATAATACAATTATCCAATGTTTATGCAAGGGAAGAGACATTGACAAAGCTTTCCAGCTTTATAATAAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAACGTACTTATTAATGGTCTTTGTATATATGGTGACCTAAAGGATGCTGATCGAATGCTAGTTTCTATGGAGGATCGAAATATAAGCTTGACAAAAGTTGCTTATATGACAATAATTAAAGCACATTGTGCAAAGGGTCAGGTCTCTAAAGCGTTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTTATTTCCATTAGAGATTATAGCGCTATCATTAATCGGCTGTGCAAAAGGGGTCTAATTACTGAAGCGAAGTACTTCTTTGTTATGATGTTATCAGAAGGCGTAACTCCTGATTCTGAAATTTGTGAGACAATGCTTAATGTTTTCCATCAACAGGGCGACAACAGTTTAGTGTTAGAATTCCTTGCTATGGTGGTTAAATCTGGCTTTATTTCACATCGATCCATTCCTTGCTATGATAACTTGTCCTTTGGCATAAAAGGGTGTAGAGGATAA 2595 39.15 MRAFSVSKVISQSSWCLKVNVHSRTTVSCSSRILASFSSVILARPSVSAARLEAESVTTSFVLDQNDPVCEILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDEVLDSLRTQNPDVAVAFFYLLRNEYGFRHSRFSQFAVSHILAGKGRFKELHSVIKQLLEEQGSGSASTCCDLLLNKFRNWDSNSVVWDTLAFVYSRHEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDIMWNLYSEIKVRAPHSEYTNSILMHGLCEQSKLQDAISFLQDSNEVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGAQKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGRIEEALTLLDEMETLRLKPDFIVYSILIHGLCKEGFVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLFENGNISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDIAEAMQLYCRMIERGITPSVVTFNTLIKGFCRMGDLVEARKMLEVIRSNGLLPSVVTYTTLMNAYCEVGNMQEMFHLLHEMEANAVVPTHVTHTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDPVTYNTIIQCLCKGRDIDKAFQLYNKMLLHNLDPTHVTYNVLINGLCIYGDLKDADRMLVSMEDRNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYFFVMMLSEGVTPDSEICETMLNVFHQQGDNSLVLEFLAMVVKSGFISHRSIPCYDNLSFGIKGCRG 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33467520 33472398 - ClG42_05g0254300.10 Clacu05g2543 250290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2543 864 Gene3D Tetratricopeptide repeat domain 90 235 IPR011990 GO:0005515(InterPro)
Clacu05g2543 864 Gene3D Tetratricopeptide repeat domain 740 851 IPR011990 GO:0005515(InterPro)
Clacu05g2543 864 Gene3D Tetratricopeptide repeat domain 495 616 IPR011990 GO:0005515(InterPro)
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 705 IPR002885 -
Clacu05g2543 864 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 427 679 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Clacu05g2543 864 Gene3D Tetratricopeptide repeat domain 236 348 IPR011990 GO:0005515(InterPro)
Clacu05g2543 864 Gene3D Tetratricopeptide repeat domain 617 737 IPR011990 GO:0005515(InterPro)
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 776 810 IPR002885 -
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 706 740 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 603 636 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 288 322 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 463 496 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 708 740 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 323 357 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 743 776 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 534 566 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 673 706 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 638 671 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 568 601 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 393 426 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 780 812 IPR002885 -
Clacu05g2543 864 NCBIfam pentatricopeptide repeat 428 461 IPR002885 -
Clacu05g2543 864 SUPERFAMILY HCP-like 507 712 - -
Clacu05g2543 864 Pfam PPR repeat 386 416 IPR002885 -
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Clacu05g2543 864 Gene3D Tetratricopeptide repeat domain 418 490 IPR011990 GO:0005515(InterPro)
Clacu05g2543 864 Gene3D Tetratricopeptide repeat domain 349 417 IPR011990 GO:0005515(InterPro)
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Clacu05g2543 864 Pfam PPR repeat family 670 718 IPR002885 -
Clacu05g2543 864 Pfam PPR repeat family 285 333 IPR002885 -
Clacu05g2543 864 Pfam PPR repeat family 600 649 IPR002885 -
Clacu05g2543 864 Pfam PPR repeat family 531 579 IPR002885 -
Clacu05g2543 864 Pfam PPR repeat family 743 789 IPR002885 -
Clacu05g2543 864 Pfam PPR repeat family 426 474 IPR002885 -
Clacu05g2543 864 SUPERFAMILY TPR-like 357 560 IPR011990 GO:0005515(InterPro)
Clacu05g2543 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2543 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32