Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2557 ATGGGGAAAACCGGGGCCAAGTTGCCAAGTTTCTGCCTGAACCGGATCCGGCCTCATGTTCGAGTTCCTATTCAATCCAAACCGGACTCTGTTTCTGTAAAAACCGGTCCTAACAAGAAGGCTGATGATTCCGTTGATGACATTCAAGTTGGAGCTAAGCCAGTTTTGGGAATTGGAAGGAAGATCATGATTGTGGTTGATTCCACCATTGAAGCTGAAGGAGCTCTTCATTGGGCTCTCTCTCACACTGTCCAAAATCAAGACAACATTCTTCTTCTTCATCTCACTAAGCCTTCAACGTCAAAAGGAGAAGGACTGAGTAAGGAGACAGCACCGAGAGCTTATGAATTGGTTCATTCCATGAGAACTTTATGCCAATTGAAGAGACCTGAGGTGGAAACGGAAGTTGCGGTGGTGGAAGGAGGGAAGGAGAAAGGGGCAGTGATAGTGGAAGAAGCGAGAAAGCGAGGGGTGTCGTTGCTGGTTTTGGGGCAGAAGAAACGGTCGACGACATGGCGGCTTCTGATGGTGTGGGCAGGCCACCGGTGGGGCGGCGGAGGCGGCGGTGGCGGTGGCGGTGTGGTGGAGTATTGTATACAAAATGCGAGCTGTATGGCGATTGCGGTGAGAAGGAAGAGCAAGAAATTGGGTGGTTATTTGATCACTACAAAGCGTCAAAAGGATTTCTGGCTTTTGGCTTAA 702 49.57 MGKTGAKLPSFCLNRIRPHVRVPIQSKPDSVSVKTGPNKKADDSVDDIQVGAKPVLGIGRKIMIVVDSTIEAEGALHWALSHTVQNQDNILLLHLTKPSTSKGEGLSKETAPRAYELVHSMRTLCQLKRPEVETEVAVVEGGKEKGAVIVEEARKRGVSLLVLGQKKRSTTWRLLMVWAGHRWGGGGGGGGGGVVEYCIQNASCMAIAVRRKSKKLGGYLITTKRQKDFWLLA 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33539958 33540855 - ClG42_05g0255700.10 Clacu05g2557 250304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2557 233 CDD USP_Like 61 209 - -
Clacu05g2557 233 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 233 - -
Clacu05g2557 233 Gene3D HUPs 59 217 IPR014729 -
Clacu05g2557 233 Pfam Universal stress protein family 60 210 IPR006016 -
Clacu05g2557 233 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 60 213 - -
Clacu05g2557 233 MobiDBLite consensus disorder prediction 25 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2557 Clacu-Chr5:33539958 Clacu11g1751 Clacu-Chr11:28692375 6.00E-21 dispersed
Clacu04g1217 Clacu-Chr4:26334691 Clacu05g2557 Clacu-Chr5:33539958 3.50E-42 wgd
Clacu05g2557 Clacu-Chr5:33539958 Clacu06g1650 Clacu-Chr6:27267407 2.20E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2557 - - - 0.0