Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2559 ATGATGGGTCTGAAAAGTGGAGCTGAGGGTACGATGCTGAGTATGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGGTTGGGTTCTCCAATGATATACGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 468 44.87 MMGLKSGAEGTMLSMVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33562026 33563738 - ClG42_05g0255900.10 Clacu05g2559 250306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2559 155 FunFam protein CRABS CLAW isoform X3 90 149 - -
Clacu05g2559 155 SUPERFAMILY HMG-box 84 136 IPR036910 -
Clacu05g2559 155 Gene3D High mobility group box domain 87 141 IPR036910 -
Clacu05g2559 155 PANTHER PROTEIN YABBY 6-RELATED 13 151 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Clacu05g2559 155 Pfam YABBY protein 15 138 IPR006780 GO:0007275(InterPro)
Clacu05g2559 155 CDD HMG-box_SF 99 135 - -
Clacu05g2559 155 MobiDBLite consensus disorder prediction 66 86 - -
Clacu05g2559 155 MobiDBLite consensus disorder prediction 66 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2559 Clacu-Chr5:33562026 Clacu05g2577 Clacu-Chr5:33676055 2.80E-83 dispersed
Clacu05g2559 Clacu-Chr5:33562026 Clacu01g0387 Clacu-Chr1:3915633 7.30E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47778 PF04690 YABBY 1.60E-40 CL0114 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2559 K25796 - csv:101219863 241.506