Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2560 ATGCGATACGATTTTTGTAATGCCCCAAAATTTAGTTCAATGCTCGCTAGCTATAGAGAGGTGAGGATCCATGAAAGTTTGGAGGAGCTAAGTACTGATTTAGCTGACTATATTGCTGAATTATCAGAGGCATCTGTGAAAGAACGTGGGGTATTTTCTATTGCGTTATCTGGTGGTTCTCTGATTAGTTTAATGGGAAAGCTCTGTGAAGCTCCTTACAACAAGACTGTCGACTGGGCCAAGTGGTATATATTTTGGGCTGATGAACGTGTTGTTGCAAAAAGCCATGCGGACAGCAATTATAAGCTTGCAAAGGATAACCTTCTTTCCAAGGTGCCAATTGTTCCCAGCCATGTACACTCGATCAATGATTCGGTGTCAGCTGAGGAAGCTGCTGATGAGTACAAGTTCGTCCTTCGACAGTTAGTTAAATCCCGCATCGTAAGTGTGTCTGATGTGAGTGACAGTCCCAAGTTTGACCTCATACTACTTGGAATGGGTTCTGATGGCCATGTCGCCTCATTATTCCCCAACCACTCTGTGGTCGAGGAGAAAGATGAATGGGTTGCCTTCATAACCGATTCTCCGAAACCTCCTCCAGAGAGAATCACCTTCACATTGCCTGTGATCAACTCTGCATCAAATGTGGCGATTGTTGTGACAGGCAAAAACAAAGCAGAGGCTGTACATTTGGCCATCGATGATGGAGGAGCAGACTGCCCACTCCTACCTGCGAGGCTTGAGGCATTTGCTTGGCCTTGGAAATGGAAACCCAAATCCAGTTTCCGATTACATTTGCCTCGTGAGAGAAGATTCCCTTCAATGTTTCATCATTTCATTAATATGAAAATTGCATCGCATTCAACGAGTTGTAGGCCTCTGCTCCATCATTTCATCGCGCAGAAGATGTCGCCATTTGAGTTGTCGATGACGTTCCCTTACGATGTCTGA 951 44.9 MRYDFCNAPKFSSMLASYREVRIHESLEELSTDLADYIAELSEASVKERGVFSIALSGGSLISLMGKLCEAPYNKTVDWAKWYIFWADERVVAKSHADSNYKLAKDNLLSKVPIVPSHVHSINDSVSAEEAADEYKFVLRQLVKSRIVSVSDVSDSPKFDLILLGMGSDGHVASLFPNHSVVEEKDEWVAFITDSPKPPPERITFTLPVINSASNVAIVVTGKNKAEAVHLAIDDGGADCPLLPARLEAFAWPWKWKPKSSFRLHLPRERRFPSMFHHFINMKIASHSTSCRPLLHHFIAQKMSPFELSMTFPYDV 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33569405 33573632 - ClG42_05g0256000.10 Clacu05g2560 250307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2560 316 PANTHER 6-PHOSPHOGLUCONOLACTONASE 12 248 IPR039104 -
Clacu05g2560 316 CDD 6PGL 28 247 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Clacu05g2560 316 Coils Coil 27 47 - -
Clacu05g2560 316 FunFam Probable 6-phosphogluconolactonase 16 256 - -
Clacu05g2560 316 Gene3D - 16 251 - -
Clacu05g2560 316 NCBIfam 6-phosphogluconolactonase 23 240 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Clacu05g2560 316 SUPERFAMILY NagB/RpiA/CoA transferase-like 20 245 IPR037171 -
Clacu05g2560 316 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 27 241 IPR006148 GO:0005975(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0021 Clacu-Chr1:224309 Clacu05g2560 Clacu-Chr5:33569405 4.70E-70 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2560 K01057 - csv:101210739 414.846