Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2564 ATGGGGGAAGCAAACGAAGGAAGAAGTAGAGGAATGGAGAAAGTTCCTCTACAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCAATTCACAACAGACCCAAATTCGGGCGTTTAATGAAGAAGAAGAAGAAGATGGAGAGGAGATTGAGCTTAATCTTGGGCTTTCACTAGGGGGTCGATTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGATCATCGTCCATAGCCGGTACCATGCTTTTGAGGGACGATGAGGCTTCTACTCCAGCAGCAGTATCGTACCCGGCGGCGCTTATTCGGACCTCGTCTCTTCCGCCGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCGAAAAGGAGACGATTTGAGAAGCAGAGGAATAAGGATGGGATTGGGATGGGGACCGGCGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGAAGGCCTTACAGGATTGAATTTGAGAGAGAAAAGGCCTGGTTCGGCTATTTCGACGGTGGCACCGCCATTCGGGTTGCCAACGTGGGCTGCAGCTGCTCGACAGGCTCTTACTGGCGGAATTGTGGATGAGGGTGGCAAAGGCAAAGGTGGCTGTGCATCAGGTGGAGGCGGAGGCTTACCGGCTGTCGGGCAGCCTGCCTCTCAGTGCTCCGCTGAATCGCAGGGCGGAAGCTCGTCGGGAATGTCGGAATTGGACAGTAAACACATCCAAGGATCAAGCAGTTACGGTGAAGCGAGAAGCTCCTCACAAGAGCGAGGCAACCCAGAGGCTGCAGGTTCTTCAGGATCGAAGATGTGTGAGAACCCATCTGGCAGTTCCAAAACAGAGACGAAAAATCCATCCAAGAAACCCGATTCAGGTGAGAACAGGGGAAGAGAAGCGGGAACGACATCGATGGAAGACATGCCGTGTGTGTTTACAATAGGGGACGGGCCAGATGGGAGAAGGGTGGAAGGAATTCTTTACAAGTATGGAAAAGGTGAGGAAGTTAGGATAATGTGTGTTTGCCATGGGAAGTTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCATCCCTTAAGACATATAGTTGTCAATCCCAATTCTGGTCCCTGTTTGTGA 1164 50.6 MGEANEGRSRGMEKVPLQTEKYPTDLLQRFLCSNSQQTQIRAFNEEEEEDGEEIELNLGLSLGGRFGVDKNSKKLIRSSSIAGTMLLRDDEASTPAAVSYPAALIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGTGGCFEEERREIEGLTGLNLREKRPGSAISTVAPPFGLPTWAAAARQALTGGIVDEGGKGKGGCASGGGGGLPAVGQPASQCSAESQGGSSSGMSELDSKHIQGSSSYGEARSSSQERGNPEAAGSSGSKMCENPSGSSKTETKNPSKKPDSGENRGREAGTTSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPCL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33608684 33611410 + ClG42_05g0256400.10 Clacu05g2564 250311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2564 387 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 104 140 IPR032310 -
Clacu05g2564 387 MobiDBLite consensus disorder prediction 228 292 - -
Clacu05g2564 387 MobiDBLite consensus disorder prediction 221 325 - -
Clacu05g2564 387 Pfam Tify domain binding domain 346 379 IPR032308 -
Clacu05g2564 387 Pfam Ethylene-responsive binding factor-associated repression 49 83 IPR012463 -
Clacu05g2564 387 Coils Coil 120 140 - -
Clacu05g2564 387 PANTHER AFP HOMOLOG 2 1 382 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0202 Clacu-Chr7:2400738 Clacu05g2564 Clacu-Chr5:33608684 7.20E-19 transposed
Clacu04g1236 Clacu-Chr4:26489212 Clacu05g2564 Clacu-Chr5:33608684 1.90E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2564 - - - 0.0