Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2566 ATGTGGAAAAGAGTTCTATGTTCAATTCCTCACAGGTCGTTTTCCTCTGCGCCAGAAACCCCATCTCTCTACTCCTTCCTCCAACCTTCTCTTTTTGCCCTAAAGAGAACCCCATTTTCGCCTTCTCAAGACTCCACCGACCTCCGTCAGGATCCAACTCCTCAAATTTTAACTCCAGATCGCGTCGCCGCCGTAGAAACGGCCCTCCACAAGTCCCTCCTCACCAGCGACACTGATGAGGCATGGAAATCCTTCAAATTGCTCACGAGAAGCTCTGTTTTCCCATGTAAGCCTCTTACCAATTCACTTATTGCTCACTTGTCCTCAATTGGGGACGTTCATAATCTGAAAAGGGCCTTTGCATCTGTGGTGTTTGTTATTGAGAAGAAACCTGAACTGTTGGATTTTGGATCTGTTAAAGCTTTATTGGCTTCTATGAGATGTGCCAACACTGCTGCCCCTGCTCTTTCTTTGATCAAATGCATGTTTAAGAATCGATGCTTCGTGCCTTTTAGTGTTTGGGGCAATGAACTTGTTGATATTTGCAGACAGAATGGGAGTTTGATTCCCTTTTTAAGAGTTTTTGAAGAGAACTGTAGGATTGCTTTAGATGAGAGCTTGGATTTTATGAAACCAGACCTTATTGCTTGTAATGCAGCACTTGAAGGGTGTTGCTATGAGCTTGAATCTGTAACAGATGCTGAGAAAGTCGTTGAAACGATGTCACTTTTGTATCTTCGGCCTGATGAAGTGAGTTTTGGTGCTCTTGCTTATTTGTATGCATTGAAGGGGCTTGAACAGAAGATAATAGAGTTAGAAGTCTTGATGGGAAATTTTGGTTTTAATCATAAAGATCTCTTTTTTAGTAGTTTGATTAGTGGATACGTTCATGCGAGCAACTTTGCTGCTGTTTCCAAGACTATGTTGCGTAGTTTAAAAGATGAATGTGGAGCACATGTACATTTTGGTGAAAAAACGTATTTGGAAATGGTTAAGGGGTTTATTCAAAGTGGAAATCTGAAGGAATTATCTGCATTGATTGTCAATGCTAAGAATTTGGAGTCTTCATCAGAAGTTGATGGATCTATTGGATTTGGTATCATTAATGCATGTGTTAATATTGGATGGTTAGATAAGGCGCATGACATTCTGAACGAAATCAATTCCCAGGGAGTTTCCCTGGGCCTTGGAGTCTATCTGCCAATCTTGAAAGCTTACAGGAAGGAGCATCGAACAGCTGAAGCCACCCGATTAATCATGGATATTAGCAGTTCTGGGCTTCAGTTGGACGCAGAGAGTTATGATGCTCTAATAGAGGCATCGATGTCGAACCAAGATTTTCAGTCAGCTTTTGCTTTGTTCAGGAATATGAGAGAAACAAGAAAATCTGACATGAAAGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAACCATAGGCCTGAGTTGATGGCTGCCTTCTTAGATGAAGTTGTTGAAGATCCTCTTGTGGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGACTCGAGGATGCGAGGAGAACATTCCGAAGAATGAAATTTCTGCAGTTTGAACCAAATGAGCAGACCTTCTTGTCCCTAATTAATGGCTATGTGTCTGCAGAGAGATATTTCTGTGTTCTGATGCTGTGGAACGAACTTAAGTGGAAGATTACAGCAAATGGGGAGACAGGTATCAAACTTGACAACAACTTGGTTGATGCATTCCTGTATGCTTTGGTCAAGGGAGGTTTCTTCGATGCCGTGATGCAAGTCGTTGAAAAAACTAAGGATACGAAGATCTTTGTTGATAAGTGGAAGTATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAGTTGAGGAGGAGGAACCACAGGAAAATGGAATCATTAATTGCTTTCAAGAACTGGGCTGGTCTGAATGCTTGA 1968 41.36 MWKRVLCSIPHRSFSSAPETPSLYSFLQPSLFALKRTPFSPSQDSTDLRQDPTPQILTPDRVAAVETALHKSLLTSDTDEAWKSFKLLTRSSVFPCKPLTNSLIAHLSSIGDVHNLKRAFASVVFVIEKKPELLDFGSVKALLASMRCANTAAPALSLIKCMFKNRCFVPFSVWGNELVDICRQNGSLIPFLRVFEENCRIALDESLDFMKPDLIACNAALEGCCYELESVTDAEKVVETMSLLYLRPDEVSFGALAYLYALKGLEQKIIELEVLMGNFGFNHKDLFFSSLISGYVHASNFAAVSKTMLRSLKDECGAHVHFGEKTYLEMVKGFIQSGNLKELSALIVNAKNLESSSEVDGSIGFGIINACVNIGWLDKAHDILNEINSQGVSLGLGVYLPILKAYRKEHRTAEATRLIMDISSSGLQLDAESYDALIEASMSNQDFQSAFALFRNMRETRKSDMKASYLTIMTGLMENHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKITANGETGIKLDNNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFVDKWKYKQAFMETHKKLKVAKLRRRNHRKMESLIAFKNWAGLNA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33617801 33619768 - ClG42_05g0256600.10 Clacu05g2566 250313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2566 655 Pfam Pentatricopeptide repeat domain 418 461 IPR002885 -
Clacu05g2566 655 Gene3D Tetratricopeptide repeat domain 63 361 IPR011990 GO:0005515(InterPro)
Clacu05g2566 655 Gene3D Tetratricopeptide repeat domain 362 467 IPR011990 GO:0005515(InterPro)
Clacu05g2566 655 Pfam PPR repeat 367 392 IPR002885 -
Clacu05g2566 655 Gene3D Tetratricopeptide repeat domain 468 653 IPR011990 GO:0005515(InterPro)
Clacu05g2566 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Clacu05g2566 655 PANTHER BNAC05G43320D PROTEIN 15 654 - -
Clacu05g2566 655 Pfam PPR repeat family 505 548 IPR002885 -
Clacu05g2566 655 NCBIfam pentatricopeptide repeat 505 537 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2566 Clacu-Chr5:33617801 Clacu09g0716 Clacu-Chr9:6210812 3.40E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2566 - - - 0.0