Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2572 ATGGCTTCGATCACAGCCGTAATTCAGTCTCCAATTCATCGGTTACCTTCCTTTCGATTGTCGTCTCCTAATAGAACAGTTCCCGCCAATTATTTCGTTCTTCAATGTCGATCACTTGCTTCTAAAGCTTTGAACTCGCCGTTTTCACCGTTGACGGAGAATCGAACTGTTTCGCCATCGGTGGAACTATCTAGCAAGGCTATTGGGCTCTTAAGTTCTAGACAACCGTTAAAGTCTCGAAGTCTAGTTCGTCTGCCGGTGGTGAGGGCGGCTGCAGCTGAAGCCGACGGAGCTTCCGATGGGTTGAATAGCCCTTCGAAGAGCTTTGCTGCAAGATTCCCAGCACTCATTACTGGTTTCTACTTCTTTATGTGGTACTTTTTAAATGTTATCTTCAACATACTCAACAAAAAAGTTTACAATTATTTTCCATATCCATACTTTGTCTCTGTCATACATCTTCTTGTTGGAGCTGGATATTGTCTCATTTCTTGGGCTGTAGGTCTCCCAAAACGTGCCCCGATAGATAAGGAGCTCTTGCTATTATTGACTCCAGTTTCGCTATGTCATGCACTTGGACATGTGATGTCAAATGTTTCATTTGCAGCTGTTGCTGTGTCCTTCACTCACACCATTAAAGCTCTGGAGCCATTCTTTAATGCTGCTGCTTCTCAATTTGTTTTGGGACATCAAATTCCCTTCAGCTTGTGGCTTTCTCTAGCACCTGTTGTTTTAGGTGTGTCAATAGCATCACTAACGGAACTTTCCTTCAATTGGACTGGCTTTGTGAGTGCAATGATTTCAAACGTTGCATTTACCTATAGAAGTATCTATTCGAAGAAAGCAATGACAGGAATGGACAGCACAAACGTGTATGCATACACCACAATAATCGCTCTTTTGTTTTGCATTCCTCCTGCAGTTATGATTGAGGGACCGCAGTTGCTGCAGCATGGTTTTAAGGATGCCATTGCCAAAGTGGGTCTACAAAAGTTCCTGTCTGACCTTTTCTGGATCGGCATGTTTTATCATCTATACAATCAGCTTGCTGCTAATACTCTTGAACGTGTTGCACCATTAACACACGCTGTAGGAAATGTATTGAAGCGAGTTTTTGTGATTGGATTCTCCATTGTTGTTTTTGGCAATAAGATTTCAACTCAAACTGGAATTGGTACTGCTATAGCAATTGCTGGTGTCGCCATCTACTCCTTGATTAAAGCAAACTTGGAGGAACAAAAACGGAGGGCTGCTAAAATTCCATCATCATAG 1272 42.45 MASITAVIQSPIHRLPSFRLSSPNRTVPANYFVLQCRSLASKALNSPFSPLTENRTVSPSVELSSKAIGLLSSRQPLKSRSLVRLPVVRAAAAEADGASDGLNSPSKSFAARFPALITGFYFFMWYFLNVIFNILNKKVYNYFPYPYFVSVIHLLVGAGYCLISWAVGLPKRAPIDKELLLLLTPVSLCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGHQIPFSLWLSLAPVVLGVSIASLTELSFNWTGFVSAMISNVAFTYRSIYSKKAMTGMDSTNVYAYTTIIALLFCIPPAVMIEGPQLLQHGFKDAIAKVGLQKFLSDLFWIGMFYHLYNQLAANTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVAIYSLIKANLEEQKRRAAKIPSS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33644545 33648441 - ClG42_05g0257200.10 Clacu05g2572 250319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2572 423 PANTHER SOLUTE CARRIER FAMILY 35 112 405 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Clacu05g2572 423 Pfam Triose-phosphate Transporter family 118 404 IPR004853 -
Clacu05g2572 423 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 116 414 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu05g2572 423 SUPERFAMILY Multidrug resistance efflux transporter EmrE 298 405 - -
Clacu05g2572 423 SUPERFAMILY Multidrug resistance efflux transporter EmrE 155 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2409 Clacu-Chr1:34691589 Clacu05g2572 Clacu-Chr5:33644545 1.50E-148 dispersed
Clacu05g2572 Clacu-Chr5:33644545 Clacu10g0539 Clacu-Chr10:6484350 2.60E-62 dispersed
Clacu05g2572 Clacu-Chr5:33644545 Clacu09g1956 Clacu-Chr9:34444112 7.50E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2572 K15283 - csv:101221040 692.189