Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2574 ATGTCGTCCGCCGAGAAGGAAAGAGAGACGCAGGTCTACATGGCCAAGCTTGCAGAACAGGCCGAACGCTATGACGAAATGGTGGAGTGTATGAAGAAAGTTGCTAAACTAGACGTTGAGCTAACCGTAGAAGAGAGAAACTTGCTTTCTGTTGGATACAAAAATGTTATAGGTGCTAGACGAGCTTCTTGGCGCATCATGTCCTCGATTGAACAGAAGGAAGAGTCCAAAAGCAATGAGAATAATGTTAAACTTATTAAGAGTTACCGTCAGAAGGTGGAGGAAGAGCTTTCCAAGATCTGTACCGATATTCTGACTATTATTGACAAGCACCTCATCCCTTCTTCAACCTCTTCAGAAGCATCGGTTTTCTATTACAAGATGAAAGGTGACTATTACCGATATCTTGCTGAGTTCAAAACAGATCAAGAAAGAAAGGAGGCAGCTGACCAGTCATTGAAGGGATACGAGACTGCTTCGACCACCGCCAATACCGAACTTCCATCAACTCACCCTATCCGTCTTGGCCTTGCCCTCAACTTTTCTGTCTTCTACTATGAGATTATGAATTCCCCTGAAAGGGCTTGCCACTTGGCTAAACAAGCTTTTGACGAGGCAATTGCAGAGTTGGATACTTTGAGTGAGGAATCATACAAGGACAGTACCCTCATAATGCAGTTGCTGAGAGATAACCTCACTCTCTGGACATCTGATTTACCAGAAGATGGAGGTGAAGAGAACGTCAAAGGTGAGGATTCCAAACCGGCAGCACCAGCCCCCGAGATGGAGCTTTGA 795 45.03 MSSAEKERETQVYMAKLAEQAERYDEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKSNENNVKLIKSYRQKVEEELSKICTDILTIIDKHLIPSSTSSEASVFYYKMKGDYYRYLAEFKTDQERKEAADQSLKGYETASTTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENVKGEDSKPAAPAPEMEL 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33656379 33659277 - ClG42_05g0257400.10 Clacu05g2574 250321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2574 264 Coils Coil 14 34 - -
Clacu05g2574 264 Gene3D - 1 250 IPR036815 -
Clacu05g2574 264 Pfam 14-3-3 protein 14 236 IPR023410 -
Clacu05g2574 264 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Clacu05g2574 264 SMART 1433_4 8 250 IPR023410 -
Clacu05g2574 264 PANTHER 14-3-3 PROTEIN 7 241 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Clacu05g2574 264 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Clacu05g2574 264 MobiDBLite consensus disorder prediction 238 264 - -
Clacu05g2574 264 PIRSF 14-3-3 2 248 IPR000308 -
Clacu05g2574 264 MobiDBLite consensus disorder prediction 242 258 - -
Clacu05g2574 264 FunFam 14-3-3 protein epsilon 3 249 - -
Clacu05g2574 264 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Clacu05g2574 264 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Clacu05g2574 264 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Clacu05g2574 264 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Clacu05g2574 264 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Clacu05g2574 264 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Clacu05g2574 264 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Clacu05g2574 264 Coils Coil 196 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2574 Clacu-Chr5:33656379 Clacu08g1197 Clacu-Chr8:21916373 4.00E-130 dispersed
Clacu05g2574 Clacu-Chr5:33656379 Clacu08g1267 Clacu-Chr8:22633043 1.50E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2574 K06630 - csv:101221275 485.723