Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2577 ATGATGGGTCTGAAAAGTGGAGCTGAGGGTACGATGCTGAGTATGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATACGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 474 44.94 MMGLKSGAEGTMLSMVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33676055 33677764 + ClG42_05g0257700.10 Clacu05g2577 250324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2577 157 FunFam protein CRABS CLAW isoform X3 92 151 - -
Clacu05g2577 157 SUPERFAMILY HMG-box 86 138 IPR036910 -
Clacu05g2577 157 MobiDBLite consensus disorder prediction 66 99 - -
Clacu05g2577 157 Pfam YABBY protein 15 140 IPR006780 GO:0007275(InterPro)
Clacu05g2577 157 MobiDBLite consensus disorder prediction 66 88 - -
Clacu05g2577 157 CDD HMG-box_SF 101 137 - -
Clacu05g2577 157 Gene3D High mobility group box domain 89 142 IPR036910 -
Clacu05g2577 157 PANTHER PROTEIN YABBY 6-RELATED 13 153 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2577 K25796 - - csv:101219863 249.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2559 Clacu-Chr5:33562026 Clacu05g2577 Clacu-Chr5:33676055 2.80E-83 dispersed
Clacu05g2577 Clacu-Chr5:33676055 Clacu06g1211 Clacu-Chr6:22794077 2.20E-22 dispersed
Clacu05g2577 Clacu-Chr5:33676055 Clacu01g0387 Clacu-Chr1:3915633 1.30E-22 transposed
Clacu05g2577 Clacu-Chr5:33676055 Clacu11g0446 Clacu-Chr11:4204253 1.30E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2577 . 16 154 C2C2-YABBY Transcription Factor Family AT1G69180 56.8 4.2e-38 154.8
Clacu05g2559 . 16 152 C2C2-YABBY Transcription Factor Family AT1G69180 56.9 7.2e-38 154.1
Clacu01g0387 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Clacu02g2303 . 1 175 C2C2-YABBY Transcription Factor Family AT1G08465 65.5 1.5e-54 209.5
Clacu01g0387 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.5e-43 172.9
Clacu06g1211 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.2e-42 169.1
Clacu10g0295 . 22 192 C2C2-YABBY Transcription Factor Family AT1G08465 53.8 4.2e-41 164.9
Clacu11g0446 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.1e-41 164.1
Clacu01g0387 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.3e-50 194.9
Clacu10g0295 . 33 192 C2C2-YABBY Transcription Factor Family AT4G00180 54.9 8.3e-38 154.1
Clacu05g2742 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 1.9e-39 159.8
Clacu06g1211 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.0e-62 236.5
Clacu11g0446 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.2e-61 231.1
Clacu02g2303 . 1 175 C2C2-YABBY Transcription Factor Family AT2G26580 58.9 1.4e-48 189.5
Clacu01g0387 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.1e-44 174.1
Clacu10g0295 . 22 192 C2C2-YABBY Transcription Factor Family AT2G26580 50.3 3.1e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47779 PF04690 YABBY 1.00E-42 CL0114 Clacu TF