Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2577 ATGATGGGTCTGAAAAGTGGAGCTGAGGGTACGATGCTGAGTATGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATACGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 474 44.94 MMGLKSGAEGTMLSMVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33676055 33677764 + ClG42_05g0257700.10 Clacu05g2577 250324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2577 157 FunFam protein CRABS CLAW isoform X3 92 151 - -
Clacu05g2577 157 SUPERFAMILY HMG-box 86 138 IPR036910 -
Clacu05g2577 157 MobiDBLite consensus disorder prediction 66 99 - -
Clacu05g2577 157 Pfam YABBY protein 15 140 IPR006780 GO:0007275(InterPro)
Clacu05g2577 157 MobiDBLite consensus disorder prediction 66 88 - -
Clacu05g2577 157 CDD HMG-box_SF 101 137 - -
Clacu05g2577 157 Gene3D High mobility group box domain 89 142 IPR036910 -
Clacu05g2577 157 PANTHER PROTEIN YABBY 6-RELATED 13 153 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2559 Clacu-Chr5:33562026 Clacu05g2577 Clacu-Chr5:33676055 2.80E-83 dispersed
Clacu05g2577 Clacu-Chr5:33676055 Clacu06g1211 Clacu-Chr6:22794077 2.20E-22 dispersed
Clacu05g2577 Clacu-Chr5:33676055 Clacu01g0387 Clacu-Chr1:3915633 1.30E-22 transposed
Clacu05g2577 Clacu-Chr5:33676055 Clacu11g0446 Clacu-Chr11:4204253 1.30E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47779 PF04690 YABBY 1.00E-42 CL0114 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2577 K25796 - csv:101219863 249.98