Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2580 ATGGCAGCATTGCGATTACCATCGCCCTGTGTTAATTCTAATAATCCACAATCCCCAAAACTCAAATTCCCATCCACCTTCGCTTCAGAGTCTAGTTTCGGGACCAATTGGACGAGGCTTCTGTTGTTCAGAGCTTCGTTCTCGAGTTCTTCAAGAAGGAAGCTGTGCATTAGAAACGTAGCCAGCGATCGACAGAAACAACTGAAGGAGCCGGTCAACGGAGAAGTTGTAGACGACTTCGATAGCTTTCTTCCAGATTCGGCGTCCATTGCTGCAAGTATTAAGTACCATTCGGAATTCACGCCTTCTTTCTCACCGGAGGGCTTTGGGCTTTCTAAGGCATACTATGCAACTGCTGAAAGTGTTCGTGATATGCTTATCATCAACTGGAATGCTACGTATGAGTACTATGAAAAGATGAATGTGAAGCAGGCCTACTATCTGTCGATGGAGTTTTTACAGGGTAGGGCATTGCTAAATGCAATTGGAAATCTGGAACTATCAGGAATTTATGCAGATGCTTTAAGAGTGTTAGGATGTAATCTCGAGGAGGTAGCACGGCAGGAATCGGATGCTGCACTAGGAAATGGAGGATTAGGGCGGCTTGCTTCCTGCTTTCTGGACTCCCTGGCAACACTAAACTATCCAGCATGGGGATATGGACTGAGATACAAGTATGGTTTGTTCAAACAGCTTATTACAAAAGATGGACAGGAGGAAGTGGCCGAAAATTGGCTAGAGATGGGCAATCCCTGGGAAATTGCAAGACACGACATCTCCTATCCTGTGAAATTCTATGGTGAAGTCATTTCAGGCGCAGATGGAAGCAAGCAATGGGTTGGAGGAGAAAATATCACTGCTGTTGCCTATGATGTCCCAATACCAGGTTATAAAACTAAAACCACGATAAACCTCCGTTTGTGGTCCACAAAGGTTGCTCCCGAACAATTTAATTTGAGTTCTTTCAATGTTGGAGATCATGCCAATGCATATGCAGCCATAAAGAAAGCTGAAAAGATCTGTTACGTACTGTACCCTGGAGACGAGTCACTGGAGGGAAAGACTCTTAGACTGAAACAGCAATACACATTGTGCTCTGCTTCCCTTCAAGATATTGTCGCACGTTTTGAGAGGAGATCCGGGGAGACTGTGGACTGGGAAAATTTTCCAGAAAAGGTTGCTGTGCAGATGAATGATACCCATCCTACACTTTGTATCCCTGAGCTGATAAGAATATTGATGGATGTGAAAGGGTTAACCTGGAAAGAAGCTTGGGACATCACTCGTAGAACTGTCGCCTACACAAATCATACAGTTCTGCCGGAGGCGCTGGAAAAATGGGGTTTCCCCCTCATGCAGGAACTACTTCCTCGACATGTTCAGATAATTGAAATGATTGACGAGGAGCTTATCCATTCCATCATTGCTAAGTACGGTACAAAAGATCTTGAGTTGTTGCAGCAAAAGCTGAAGCAAATGAGAGTTCTAGAAAATTTTGAATTACCAGACTCGGTAATGGAACTTCTAGTAAATTCAGCGGAGTCTGCGGTAGCAGTTGATCTCGTTGAGGAAGCTGAAATTCTGGATGAGGAATCATTACCTGGTAAAGAAGTAGACGAGAATGAAGACAAAAGTATTGCGAAGAAAATAAATATTTCATTTAAAGTTGATCCAAAGCATCCAAAGATGATTCGCATGGCTAATTTGTCTGTTGTTGGTGGATATGCTGTAAATGGTGTTGCTGAAATTCATAGTGAAATTGTTAGAACTGAAGTTTTTAGCGACTTTTATGAGTTGTGGCCTAAGAAATTTCAAAACAAAACGAACGGAGTGACACCAAGAAGATGGCTCCGTTTTTGCAATCCGGACCTGAGTAAAATCATCACAAAGTGGACTGGAACAGAGCACTGGGTGACAGATACTGAAAGACTGGCAATACTCCGAGAGTTCGCTGATAACGAGGATCTCCAGTCCATGTGGGAGGAAGCTAAAAGAATAAACAAATTGAAAGTTGTCTCTTTTCTTAAAGAAAAAACTGGCTATTTAGTCAGCCCTGATGCAATGTTTGACGTACAGGTAAAACGCATCCATGAATACAAGCGGCAGTTGTTGAACATCCTGGGGATCGTCTATCGTTATAAACAAATGAAAGAAATGACTCAAGAGGAAAGAGAAGCCAAGTTTGTTCCTCGAGTTTGTATATTTGGCGGGAAAGCATTTGCTACATACGTCCAGGCCAAAAGGATTGTGAAATTCATTGTTGATGTTGGAGCTACCGTCAATAACGATCCTGATATAGGAGATCTTTTGAAGGTAGTCTTTGTTCCAGATTACAATGTGAGTGTAGCAGAAGTGCTCATTCCTGGCAGTGATCTTTCCCAGCATATCAGCACGGCTGGAATGGAGGCCAGTGGTACCAGCAACATGAAGTTTGCAATGAATGGCTGTGTACTAATTGGAACATTAGATGGGGCAAATGTAGAGATAAGAGAAGAAGTTGGAGAAGACAACTTTTTCCTCTTTGGTGCAAGGGCTCATGAAATTGCTGGCCTAAGAAAAGAAAGAGCTGAAGGCAAGTTTGTTCCTGACCCACGGTTTGAGGAAGTGAAGGCCTTCGTAAGAAGTGGGGTTTTTGGTTCCAATAACTATGAAGAACTCATGGGATCTTTAGAAGGAAATGAAGGTTATGGTCGGGCAGACTATTTCCTTGTTGGCAAGGACTTCCCTAGTTACATAGAGTGCCAAGACAGGGTTGATGAGGCCTATCGAGATCAAAAGAGATGGACCAAGATGTCGATCTTAAACACAGCTGGTTCATTCAAGTTCAGCAGTGACAGAACCATTCATGAGATCATTCCTAGGAGTCACATAAATTCTCGAGTGAATTCAACTAAGAATCACTGCAATCCGACCTAG 2916 42.97 MAALRLPSPCVNSNNPQSPKLKFPSTFASESSFGTNWTRLLLFRASFSSSSRRKLCIRNVASDRQKQLKEPVNGEVVDDFDSFLPDSASIAASIKYHSEFTPSFSPEGFGLSKAYYATAESVRDMLIINWNATYEYYEKMNVKQAYYLSMEFLQGRALLNAIGNLELSGIYADALRVLGCNLEEVARQESDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEMGNPWEIARHDISYPVKFYGEVISGADGSKQWVGGENITAVAYDVPIPGYKTKTTINLRLWSTKVAPEQFNLSSFNVGDHANAYAAIKKAEKICYVLYPGDESLEGKTLRLKQQYTLCSASLQDIVARFERRSGETVDWENFPEKVAVQMNDTHPTLCIPELIRILMDVKGLTWKEAWDITRRTVAYTNHTVLPEALEKWGFPLMQELLPRHVQIIEMIDEELIHSIIAKYGTKDLELLQQKLKQMRVLENFELPDSVMELLVNSAESAVAVDLVEEAEILDEESLPGKEVDENEDKSIAKKINISFKVDPKHPKMIRMANLSVVGGYAVNGVAEIHSEIVRTEVFSDFYELWPKKFQNKTNGVTPRRWLRFCNPDLSKIITKWTGTEHWVTDTERLAILREFADNEDLQSMWEEAKRINKLKVVSFLKEKTGYLVSPDAMFDVQVKRIHEYKRQLLNILGIVYRYKQMKEMTQEEREAKFVPRVCIFGGKAFATYVQAKRIVKFIVDVGATVNNDPDIGDLLKVVFVPDYNVSVAEVLIPGSDLSQHISTAGMEASGTSNMKFAMNGCVLIGTLDGANVEIREEVGEDNFFLFGARAHEIAGLRKERAEGKFVPDPRFEEVKAFVRSGVFGSNNYEELMGSLEGNEGYGRADYFLVGKDFPSYIECQDRVDEAYRDQKRWTKMSILNTAGSFKFSSDRTIHEIIPRSHINSRVNSTKNHCNPT 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33687268 33693625 - ClG42_05g0258000.10 Clacu05g2580 250327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2580 971 Gene3D Glycogen Phosphorylase B; 614 943 - -
Clacu05g2580 971 ProSitePatterns Phosphorylase pyridoxal-phosphate attachment site. 802 814 IPR035090 -
Clacu05g2580 971 Gene3D Glycogen Phosphorylase B; 80 613 - -
Clacu05g2580 971 Pfam Carbohydrate phosphorylase 549 950 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Clacu05g2580 971 Pfam Carbohydrate phosphorylase 177 497 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Clacu05g2580 971 CDD GT35_Glycogen_Phosphorylase 93 950 - -
Clacu05g2580 971 FunFam Alpha-1,4 glucan phosphorylase 84 512 - -
Clacu05g2580 971 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 85 950 - -
Clacu05g2580 971 PANTHER GLYCOGEN PHOSPHORYLASE 63 951 IPR000811 GO:0005737(PANTHER)|GO:0005975(InterPro)|GO:0005980(PANTHER)|GO:0008184(PANTHER)|GO:0008184(InterPro)|GO:0030170(PANTHER)
Clacu05g2580 971 PIRSF Glucan_phosphorylase_GlgP 107 969 IPR000811 GO:0005975(InterPro)|GO:0008184(InterPro)
Clacu05g2580 971 FunFam Alpha-1,4 glucan phosphorylase 611 943 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0794 Clacu-Chr3:8955497 Clacu05g2580 Clacu-Chr5:33687268 1.80E-223 dispersed
Clacu05g2580 Clacu-Chr5:33687268 Clacu07g0731 Clacu-Chr7:17190237 0.00E+00 dispersed
Clacu05g2580 Clacu-Chr5:33687268 Clacu02g2032 Clacu-Chr2:33685249 7.40E-299 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2580 K00688 - csv:101221746 1738.01