Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2584 ATGGCAACAATGGCCTCCAAAGTCTTGTTCCTCGTTCTAATTTGCTTCTTTTCATTTTCATCTTCCATTTTAGCAGAATTCGTTAAAGTTTCAGTGAAAGGAGTGACCACCATTGCTGAAACTGACAACGATTTCATTTGTGCTACTATAGATTGGTGGCCTTCTAATAAATGCGATTATGGCCAATGCCCATGGGGAAAAGCTGGCGTTCCTAATTTGGATCTTCAGAACGTTATCTTAACCAAAGCAATCAAGGAGTTCAATCCTTTGAGAATCCGAGTTGGAGGATCACTTCAAGATCAAATCATTTACAGAGTTGGAAACTCGGTGAAGAAGTGTCCTCAAATGAAGAAACAGAGTGATGGTTTGTTTGGATTCAGCAAAGGTTGTTTTACCATGGAAAGATGGGATGATTTTAATGAGCTATTCAACAAAACATCAGCTCGGGTTACGTTTGGTTTGAATGCTCTGATGGGTAAAACACCAGCCAATGATGGAAGTATCAACTGGGTTGGTGATTGGGATCCTCGTAATGCTCGAGATTTCATCCGATACACTGCCTCTAAAGGATACAAAATCGATTCTTATGAACTGGGAAATGAACTTTGTGCGAGCGGAGTTTCGGCAAGGCTTGAGCCGGATCAATATGGTAAAGATCTGACTCTAATGAGAAAAGTAGTTGAAGAGGTTTATCATGATGCCAACAACAGACCCAAAATTCTTGGACCCGCGGGTTTCTTTGACAAAGAATGGTTCAAAACTTTCCTTCAAAACACTGCCCCAAATGTTGTGGATGGAGTCACTCACCATATTTACAATCTTGGAGCAGGTGTTGATCCTACTCTTATAAATAAGGTACAAGACCCTTATGTTTTGGACCAAATTGCTCAAACTTTTAAGGAAGCTATGGAAGTTTCACAGAGCTTTGGGCCATGGTCTAAGCCTTGGGTTGGTGAATCTGGTGGTGCTTATAACAGTGGTGGCAAAACTGTTTCTCATACTTTTGCCAATGGATTCTGGTATTTGGATCAACTGGGGATGACTGCCACATTCAATCATCAGGTTTATTGCAGACAAGCCTTGATTGGTGGAAACTATGCTTTGCTTAATACCACTAGTTTCATCCCTAACCCTGATTATTATAGCGCTCTGCTATGGCACAGATTAATGGGAAAGAAGGTCCTCTCAGCATCCCACGACAGCTCTCCATACCTTCGTGTTTATTCTCACTGCACCAAAAACAACGAAGGCGTTACAGTGCTTCTAATCAACATGTCAAATTCGACCACATTCGATGTAAATATTGTAAACGACAGAAATGTTTATCCAAACTTGATGATAGGCAGCAAATTAAAGGCAAGAGAAGAGTACCATTTAACTCCCAAAGACGGCAATATTCAAAGCGACGTCATGCTTTTGAATGGAACTCCTCTTCAACTTACTCCAACCAGCTTGGACATTCCCGACATGTCGCCCAAGCTCGTCGATCCCACTTCCGCTGTGTCAGTTGCCCCTGATTCTTACGTCTTTGTCTCCATCAAAGACTTCAAAGCTCCTGCTTGCGCCTAA 1569 41.87 MATMASKVLFLVLICFFSFSSSILAEFVKVSVKGVTTIAETDNDFICATIDWWPSNKCDYGQCPWGKAGVPNLDLQNVILTKAIKEFNPLRIRVGGSLQDQIIYRVGNSVKKCPQMKKQSDGLFGFSKGCFTMERWDDFNELFNKTSARVTFGLNALMGKTPANDGSINWVGDWDPRNARDFIRYTASKGYKIDSYELGNELCASGVSARLEPDQYGKDLTLMRKVVEEVYHDANNRPKILGPAGFFDKEWFKTFLQNTAPNVVDGVTHHIYNLGAGVDPTLINKVQDPYVLDQIAQTFKEAMEVSQSFGPWSKPWVGESGGAYNSGGKTVSHTFANGFWYLDQLGMTATFNHQVYCRQALIGGNYALLNTTSFIPNPDYYSALLWHRLMGKKVLSASHDSSPYLRVYSHCTKNNEGVTVLLINMSNSTTFDVNIVNDRNVYPNLMIGSKLKAREEYHLTPKDGNIQSDVMLLNGTPLQLTPTSLDIPDMSPKLVDPTSAVSVAPDSYVFVSIKDFKAPACA 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33708975 33712196 + ClG42_05g0258400.10 Clacu05g2584 250331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2584 522 PANTHER HEPARANASE-RELATED 27 522 - GO:0004566(PANTHER)|GO:0009505(PANTHER)
Clacu05g2584 522 Gene3D Glycosidases 67 388 - -
Clacu05g2584 522 FunFam heparanase-like protein 3 65 388 - -
Clacu05g2584 522 SUPERFAMILY (Trans)glycosidases 41 390 IPR017853 -
Clacu05g2584 522 Pfam Glycosyl hydrolase family 79, N-terminal domain 29 346 IPR005199 GO:0016020(InterPro)|GO:0016798(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2584 Clacu-Chr5:33708975 Clacu11g0474 Clacu-Chr11:4515479 3.30E-136 dispersed
Clacu04g1258 Clacu-Chr4:26690245 Clacu05g2584 Clacu-Chr5:33708975 1.20E-160 wgd
Clacu05g2584 Clacu-Chr5:33708975 Clacu06g1692 Clacu-Chr6:27600282 2.90E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2584 K07964 - csv:101214214 927.161