Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2593 ATGGGTGACGATGATGAACAGCCGCCGCCGCCGCCGCCGCCGCCGTCCAAATCTTTGAGACCCACTATTAATCTGCCGCCACGGAGTTCTATGGAGTCACTCTTCGGCGGTGGGTCGGGTTTGGGATTTGGGTTTAGCCCAGGACCGATGACCCTCGTCTCGAGCTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCATCGCCGGTGGCTGCCGTTCCTCCGTCGGCGTCTGAGTTTAAGGCTTCTACCGGTCTGCTCGAATCTCCGGAGCTTTTCTCGCCTGGTCAAGGACCTTTCGGAATGACTCATCAGCAAGCTTTGGCTCAGGTTACTATGCAGGCCGCAGAAGCCTATTCTCATAATCAAATGCAAGCAGCATCTTTTTCTTCATCAGTAGCACCCTCTGCATCCTCCTCACAGCTTTTGACTTCCTTGCCGGTCGAGAAGACTAAAGATCAGCCGATGCAACCTCCGTTACAGGACTCTGCAGTTGCATCCAAGGAGCCATCAGATAACTCTCAATCAGAGCAGAGATTGCAATCTTCTTTGTGTAATGTTGATAGGCCTACTGATGATGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGACAAGTCACTGAAATTATCTACAAGGGCGAGCACAACCATAAACGACCTCAACTGAATAAGCGGGCAAAGGATGTCGGAAATTCTAACGGATATTCGAGTATTCATGGAAATCCTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGAGCAGACATCTGTGTCTTCCACTGCAAAGAAGGATCAAGAATTGAGTCATGTTACACACGAGCAGTTGTCGGGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAATCGAAAAGATGAAGACGAACCTGATGCCAAGAGACGGAACACTGAGGTTAGAATTTCTGAGCCAGCATCTTCTCATAGAACTCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTAGATGATGGCTACAGGTGGCGTAAGTATGGGCAGAAAATTGTTAAAGGCAACCCTTACCCAAGGAGCTATTATAAATGCACAACTCCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAACAGACCCGAAAGCTGTCATAACGACCTACGAAGGTAAACACAATCATGATGTTCCAGTTGGTAAAATCAGCAGCCACTGTTCAGTCAACAGTAACAATCCTCAACTAAAATCACAAAATATAGTTACTGAGAAAAAAATTTCAAGTAACAACACTGATCCTGGGAACTCTCGTCAACAGCCTGCTGGACTTTTACTGTTAAAGGAAGAACAAATAACATAG 1482 46.22 MGDDDEQPPPPPPPPSKSLRPTINLPPRSSMESLFGGGSGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAAVPPSASEFKASTGLLESPELFSPGQGPFGMTHQQALAQVTMQAAEAYSHNQMQAASFSSSVAPSASSSQLLTSLPVEKTKDQPMQPPLQDSAVASKEPSDNSQSEQRLQSSLCNVDRPTDDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHKRPQLNKRAKDVGNSNGYSSIHGNPELSSQVQSGYLNKLNEQTSVSSTAKKDQELSHVTHEQLSGTSDGEGGSEIETGVNRKDEDEPDAKRRNTEVRISEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPVGKISSHCSVNSNNPQLKSQNIVTEKKISSNNTDPGNSRQQPAGLLLLKEEQIT 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33778948 33781584 + ClG42_05g0259300.10 Clacu05g2593 250340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2593 493 MobiDBLite consensus disorder prediction 1 21 - -
Clacu05g2593 493 ProSiteProfiles WRKY domain profile. 374 439 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2593 493 MobiDBLite consensus disorder prediction 1 31 - -
Clacu05g2593 493 ProSiteProfiles WRKY domain profile. 200 258 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2593 493 MobiDBLite consensus disorder prediction 330 354 - -
Clacu05g2593 493 FunFam WRKY transcription factor 33 366 432 - -
Clacu05g2593 493 MobiDBLite consensus disorder prediction 264 283 - -
Clacu05g2593 493 MobiDBLite consensus disorder prediction 251 283 - -
Clacu05g2593 493 SUPERFAMILY WRKY DNA-binding domain 371 439 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2593 493 Pfam WRKY DNA -binding domain 380 437 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2593 493 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2593 493 Gene3D WRKY domain 186 259 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2593 493 Gene3D WRKY domain 364 440 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2593 493 MobiDBLite consensus disorder prediction 297 364 - -
Clacu05g2593 493 SMART WRKY_cls 199 257 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2593 493 SMART WRKY_cls 379 438 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2593 493 MobiDBLite consensus disorder prediction 467 493 - -
Clacu05g2593 493 MobiDBLite consensus disorder prediction 148 210 - -
Clacu05g2593 493 MobiDBLite consensus disorder prediction 314 328 - -
Clacu05g2593 493 MobiDBLite consensus disorder prediction 148 197 - -
Clacu05g2593 493 SUPERFAMILY WRKY DNA-binding domain 198 258 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu05g2593 493 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 129 453 IPR044810 GO:0003700(InterPro)
Clacu05g2593 493 FunFam WRKY transcription factor 184 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2593 Clacu-Chr5:33778948 Clacu11g0604 Clacu-Chr11:5823888 1.20E-116 dispersed
Clacu06g1333 Clacu-Chr6:24244620 Clacu05g2593 Clacu-Chr5:33778948 6.10E-42 transposed
Clacu10g2036 Clacu-Chr10:33827897 Clacu05g2593 Clacu-Chr5:33778948 3.30E-58 transposed
Clacu05g2593 Clacu-Chr5:33778948 Clacu08g1152 Clacu-Chr8:21579077 2.60E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47782 PF03106 WRKY 8.50E-26 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2593 - - - 0.0