Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2600 ATGAGCTTTGAACATTCCGGAACTACCGCCGGTTCGTCGGCGCCGGGGACCACCGGAGGCAGGGGAAACTCCTCGTCGTCATCGGCGTCGGGGACGAGCAAGGAGAAGCAAAAGGAGAAAGCAAGAGTGAGTAGAACGTCAATGATATTGTGGCACGCTCACCAGAATGATTCTGCTGCTGTTCGCAAACTCCTGGAGGAGGATCAATCCCTTGTCCATGCCAGAGATTACGACAGCCGCACTCCTCTTCATGTTGCATCGCTTCATGGTTGGATCGACGTTGCCAAGTGCTTGATTGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACTCCGCTAGCTGATGCGGAAGGAGCTAAAAAGCATGGCATGATTGAGCTTTTAAAATCATACGGTGGCCTTTCCTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCCTCCTCCTCTGCCGAATAAATGTGACTGGGAAATTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATTGGCAAGGGGTCCTTCGGTGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAACGTATTCTTCCATCACTTTCAGATGATAGACTTGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACCGAGAAGAAACCACTTATGCTAATCACTGAATACTTAAGAGGGGGCGATCTTCACCAGTACCTCAAGGACAAAGGTTCGCTCAGTCCTGCAACGGCCATCAATTTTGCACTGGACATTGCCAGGGGAATGGCTTATCTCCACAATGAGCCAAATGTTATAATTCACCGTGATCTAAAACCAAGGAACGTTCTTTTAGTCAATTCTGGTGCGGACCATCTAAAAGTTGGCGATTTTGGTCTAAGCAAACTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACTGGCGAGACCGGGAGCTACCGGTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAGGTGGATGTGTTTTCTTTTGCGATGATATTATACGAGATGCTTGAGGGAGACCCTCCACTGGCAAATTATGAGCCATATGAAGCTGCCAAGTACGTGGCTGAAGGTCATAGACCGATGTTCCGTGCGAAAGGATACCTTCCTGTTCTGAGAGAGTTAACAGAAGAATGTTGGGCATCTGATATGAACAAGAGACCATCTTTCTTGGAAATTCTCAAAAGACTTGAAAAGCTCGCTTTAGCATCATCATCCCAAATCCCAGTCCCATTTTCCGTGGAGAAATCTTCTCCAGAATGTGGCCGCCTTCAATGTCACTCATAG 1380 46.38 MSFEHSGTTAGSSAPGTTGGRGNSSSSSASGTSKEKQKEKARVSRTSMILWHAHQNDSAAVRKLLEEDQSLVHARDYDSRTPLHVASLHGWIDVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFRAKGYLPVLRELTEECWASDMNKRPSFLEILKRLEKLALASSSQIPVPFSVEKSSPECGRLQCHS 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33827712 33833566 + ClG42_05g0260000.10 Clacu05g2600 250347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2600 459 PIRSF ILK 2 440 - -
Clacu05g2600 459 MobiDBLite consensus disorder prediction 1 44 - -
Clacu05g2600 459 ProSitePatterns Protein kinases ATP-binding region signature. 176 197 IPR017441 GO:0005524(InterPro)
Clacu05g2600 459 Gene3D Phosphorylase Kinase; domain 1 155 249 - -
Clacu05g2600 459 Gene3D - 20 144 IPR036770 -
Clacu05g2600 459 ProSiteProfiles Protein kinase domain profile. 170 431 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2600 459 SUPERFAMILY Protein kinase-like (PK-like) 168 435 IPR011009 -
Clacu05g2600 459 Pfam Protein tyrosine and serine/threonine kinase 174 428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2600 459 CDD STKc_MAP3K-like 176 428 - -
Clacu05g2600 459 ProSiteProfiles Ankyrin repeat region circular profile. 78 110 - -
Clacu05g2600 459 FunFam Integrin-linked protein kinase family 249 440 - -
Clacu05g2600 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu05g2600 459 Gene3D Transferase(Phosphotransferase) domain 1 250 448 - -
Clacu05g2600 459 PANTHER SERINE-THREONINE PROTEIN KINASE 25 432 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu05g2600 459 SMART serkin_6 170 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu05g2600 459 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515(InterPro)
Clacu05g2600 459 SMART ANK_2a 78 107 IPR002110 GO:0005515(InterPro)
Clacu05g2600 459 FunFam serine/threonine-protein kinase STY46-like 163 249 - -
Clacu05g2600 459 FunFam serine/threonine-protein kinase STY8 23 144 - -
Clacu05g2600 459 SUPERFAMILY Ankyrin repeat 49 136 IPR036770 -
Clacu05g2600 459 MobiDBLite consensus disorder prediction 1 32 - -
Clacu05g2600 459 Pfam Ankyrin repeats (3 copies) 52 133 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1878 Clacu-Chr2:32268201 Clacu05g2600 Clacu-Chr5:33827712 5.50E-69 dispersed
Clacu05g2600 Clacu-Chr5:33827712 Clacu09g1433 Clacu-Chr9:20259546 2.40E-58 dispersed
Clacu05g2600 Clacu-Chr5:33827712 Clacu03g0733 Clacu-Chr3:8172960 4.60E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73601 PF07714 PK_Tyr_Ser-Thr 9.10E-64 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2600 - - - 0.0