Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2602 ATGAAGTTTGGCAAACAATTTGCTGCACAGATGGTTCCAGAATGGCAACAAGCCTACATGGATTACGACTTCCTCAAATCCCTCTTGAAGCAAATTGATACCTTCAACAAAACCCACGCTAAGAACCACCCTACCACTCATTCCGGCCAGCTCAGCAGAACCCTTACTCTCTACAGAGCTTTCAGCGGCCTAACGCTCCGCCACAGCCATAGCCACGGTCACACTCATGCCCATGCCCATGCCCATAATAGCCACCCAACAAGTCCTGCAGGATCGCCACAGGAGACGATGGAGGAGCAGGCGATATTGGTGAATGCGGTGAACCGGGACGGGACGAAGAAGTACCGGACGACGTTTTTGATGGCGGATGAGGAAGGAGGAGAGTATGAGCTTGTGTATTTCAGGTCATTGGACAGGGAATTCAATAAAGTGGAGAAGTTTTATAAGTCCAAAGTGGAGGAAGTTGTGAAGGAAGCGAGTGTGTTGAATAAGCAAATGGATGCTTTGATTGCTTTCAGAATCAAAGTGGAGAATCCAGAGGGTGTTTGGGACTTCTCCGGCCACCGCCCGACGGAGGAGATTACAAGACTGGCCTCTGATATTGCTGTTTCTACGGCTGCTTTGTCATCTTCCACGCCTTCTGGTGTCAGAGCCAGCAGAAGGGTTCATATAGCGATGGATTCCATAGAAGAAGGGTCGAGCCACAATGAGCATAGTAGTCATAAACCAAACAATGAATCATCAAAAGATGAAGATGAAGAGAAGAAATCAAAGGGTGAAGATAGTGAAGGGAAAGCAAGAAAAATGAAGGCCAATAGACCACCTCCACTTGAACTTCTTGATCGTGTAACAATGAATACAACTCTGGAGACCCCAAGATCCACCATTAAAGGCCTTCTCAATTTTCCCAAAAATACAGAACTCCAATTCAACAAAGAAAATCTCAACAAAATTGAGAACCAACTCAAAAAGGCTTTTGTTGTGTTTTATCACAAGCTTAGGCTACTCAAGAGCTTCAGCTTCTTGAATACTTTGGCATTTTCAAAGATAATGAAGAAATATGATAAGATTACATCAAGAGATGCAGGAAAGTCATATATGAAGATGGTGGACAGCTCTTATCTTGGGAGTTCTGATGAGGTTTCCAAGTTAATGGAGAGGGTGGAAGCTGCATTTATCAAACATTTCTGCAATGCTAATCGCACTAAAGGAATGAACATCTTGAGACCCAAAGCAAAGAAAGAAAGACATAGAATTACATTTTCAGTTGGTTTCTTTGCTGGTTGCACCATAGCTCTTGTTGTCGCCCTCATTTTTATTACACGAGCCCGACATATACTAGACGGAGAAGGTAGCTCCCAGTATATGGAAACCATGTTTCCTCTTTACAGCTTGTTTGGATTTGTCGTCTTGCACCTGCTAATGTATGCAGCAAACATATACTTTTGGAGGCGATATCAAGTAAATTACTCCTTCATATTTGGTTTCAAGCAAGGCACTGAATTGGCCTATCGAGAGGTTCTTCTTCCCAGTTTTGCTGTGGCAACTCTTGCTTTAGCCTGTGTTCTTTCTAATCTTGACATGGAGATGGACCCTGTAACAAAGTCATATCAAGCAGTGACTGAACTTCTCCCTTTAGTTTTGCTCCTTGTTGTGATTGCAGTCTTCTTATGTCCACTCAACATCTTATATCGCTCGAGTCGCTTCTTCTGCATAAGAACTTTGTACCATTGCATATGTGCTCCTCTCTACACGGTCATCTTCCCCGATTTCTTCTTGGCAGATCAGTTAACCAGCCAGGTACAAGCACTTCGTAGCTTGGAATTCTACATTTGCTATTATGGTTGGGGAGATTACAAACATCGACAGAATACTTGTAGATCCAACACTGTATTCAACACTTTCAGCTTTATCATTGCTGTTATTCCATATTGGTCACGTCTCCTTCAGTGTCTCAGGCGACTGTATGAGGAGAAAGACGCAGTGCAGGGATACAACGGGATCAAATACTTCTTGACAATTGTAGCTGTTTGCTTAAGGACAGCTTACAATCTGAACGGGGGAATAACCTGGAAGGTGCTAGCCGCAGTTTTCTCAGCTGTTGCTGCCATTATATGCACATATTGGGACATTGCCATCGATTGGGGCCTTCTGCAGCGCCATTCGAAAAACCGATGGTTGAGAGACAAGCTACTTGTTGGTCACAATAGTGTATACTATGTGGCAATGGTCTTGAATGTTTTGCTGAGGTTTGCTTGGCTGCAAACTGTGTTGGATTTCCAGTTCTCCTTCCTGCATACACAAGGTTTGATTACAATAGTGGCCAGCCTTGAGATCATTCGTCGTGGCATATGGAATTTCTTCAGGTTGGAGAATGAGCATCTGAACAATGTTGGGAAGTATCGTGCATTCAAATCTGTACCGCTGCCTTTCAACTATGATGAAGATGATGACAAAGATGATTAA 2466 43.51 MKFGKQFAAQMVPEWQQAYMDYDFLKSLLKQIDTFNKTHAKNHPTTHSGQLSRTLTLYRAFSGLTLRHSHSHGHTHAHAHAHNSHPTSPAGSPQETMEEQAILVNAVNRDGTKKYRTTFLMADEEGGEYELVYFRSLDREFNKVEKFYKSKVEEVVKEASVLNKQMDALIAFRIKVENPEGVWDFSGHRPTEEITRLASDIAVSTAALSSSTPSGVRASRRVHIAMDSIEEGSSHNEHSSHKPNNESSKDEDEEKKSKGEDSEGKARKMKANRPPPLELLDRVTMNTTLETPRSTIKGLLNFPKNTELQFNKENLNKIENQLKKAFVVFYHKLRLLKSFSFLNTLAFSKIMKKYDKITSRDAGKSYMKMVDSSYLGSSDEVSKLMERVEAAFIKHFCNANRTKGMNILRPKAKKERHRITFSVGFFAGCTIALVVALIFITRARHILDGEGSSQYMETMFPLYSLFGFVVLHLLMYAANIYFWRRYQVNYSFIFGFKQGTELAYREVLLPSFAVATLALACVLSNLDMEMDPVTKSYQAVTELLPLVLLLVVIAVFLCPLNILYRSSRFFCIRTLYHCICAPLYTVIFPDFFLADQLTSQVQALRSLEFYICYYGWGDYKHRQNTCRSNTVFNTFSFIIAVIPYWSRLLQCLRRLYEEKDAVQGYNGIKYFLTIVAVCLRTAYNLNGGITWKVLAAVFSAVAAIICTYWDIAIDWGLLQRHSKNRWLRDKLLVGHNSVYYVAMVLNVLLRFAWLQTVLDFQFSFLHTQGLITIVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEDDDKDD 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33850564 33856372 + ClG42_05g0260200.10 Clacu05g2602 250349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2602 821 ProSiteProfiles EXS domain profile. 627 821 IPR004342 GO:0016020(InterPro)
Clacu05g2602 821 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 819 - GO:0000822(PANTHER)|GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0006817(PANTHER)|GO:0015114(PANTHER)|GO:0016036(PANTHER)
Clacu05g2602 821 CDD SPX_PHO1_like 2 364 IPR034092 -
Clacu05g2602 821 MobiDBLite consensus disorder prediction 229 275 - -
Clacu05g2602 821 ProSiteProfiles SPX domain profile. 1 368 IPR004331 -
Clacu05g2602 821 MobiDBLite consensus disorder prediction 69 96 - -
Clacu05g2602 821 Pfam EXS family 459 795 IPR004342 GO:0016020(InterPro)
Clacu05g2602 821 Pfam SPX domain 1 370 IPR004331 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2602 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2602 Clacu-Chr5:33850564 Clacu09g1848 Clacu-Chr9:33209931 1.50E-231 dispersed
Clacu05g2602 Clacu-Chr5:33850564 Clacu05g2604 Clacu-Chr5:33861040 3.70E-190 proximal
Clacu05g0464 Clacu-Chr5:3876937 Clacu05g2602 Clacu-Chr5:33850564 3.50E-110 transposed
Clacu05g2513 Clacu-Chr5:33226914 Clacu05g2602 Clacu-Chr5:33850564 7.90E-98 transposed
Clacu09g2209 Clacu-Chr9:36856023 Clacu05g2602 Clacu-Chr5:33850564 2.70E-307 transposed
Clacu05g2602 Clacu-Chr5:33850564 Clacu09g1847 Clacu-Chr9:33190198 6.70E-192 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g964 . . . . . . . . . Cmo18g01150 . Cma18g01128 . Car18g01042 Sed06g1507 . . Bhi07g01530 Tan04g1051 Cmetu06g0752 Lac13g0343 Hepe10g1767 . . Cla05g02420 Cam05g2601 Cec05g2632 Cco05g2672 Clacu05g2602 Cmu05g2456 Cre05g2572 . . . . Lsi04g00392 . Chy10g01029 Cme10g00389 . . . . . . . . . . . . . . Car15g00256 Cpe13g00964 . . . . . . . . . . . . . . . . . Chy09g00228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193