Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2604 ATGGTGACGATGCACCGCCACTCAAGCGTGAGCTGCCGCATGGCGGACACATCCACCGATTTCTGGATGTGGCTTCTGGCCAATGAGCTCGAATATCAAAGAGCTCGACTGATATTTGAAGAAATACGAAGGATGAAGTTTGAGAATGAATTCAAGAAACATATGGTGCCTGAATGGACGGATGCTTATGTGGATTACAATGGCCTCAAAAGATTATTGCGTGAGATTTCCTGCGAGAAACAGATTAAGAAGTCCAGAGGAACATTTTGGCGCTCAAAGAAGAAACCAACAGTGAACGGCAAATGCAATGAGTTAACCTCTCAGCCAAGGAAATGCCAAATCATGAAGGATATTGAGAATCAAGTTGGAGATATTGACAGATCACAGCTACATGACCACAGTCACCTTTCCAAGTCTTGTTCCCACAGGAAGTTCCAAGAAATATCAGAGATTGAGATGACTTTTCTTAGAAAACTTGATGAAGAGCTCAACAAGGTCAATTCCTTCTACAAGGAGAATGTAGAGGCTGTAACCAAAGAAGCAAGCGTTTTAAGTAAACAAATGGAGACTTTGATTGCACTGCGAAGGAAGATGGAGATCTCCCCTCTGACTGAAAGACACGATTCTCATGCTGAAGTTTCTACAATCCCCTTAAGCACCACTTTGCAAACGCCTTGTCCTTCAGGAGGTGTGCACTTGGATTCAGTGGTTGAAATGGATGCCAACAATCAGCGTGAACAAAAAGAGTCTAATTGGGGTTCAGAACTGGATCAAGTTCATACAGAAGTAAGTAGCAGTAAACATTTAGAAAAAGTCACAACGCTGGAAAACAACCAATATCCCCAAGAAATTCTTAAGCATGTGAAAGTCGTCAATGTGTTCAGCTCTCGTAAATCTACAGCGAAAGATATTTGCAAGAATTTTGAGGAGGATGATTTGGATGTTGATCAAGATGACCGAAGTAAGATTGAAGAACAGTTGAAAAAAGCATTTGCAGAATTTTACCAGAAGCTTCATTCGTTAAAGCAATATAGTTTTATGAACCTGTCAGCATTTGCGAGAATCATGAAAAAGTATGAGAAGGTTTCATCAAAGGTAGCAGCCAAGTCATACATGGAAATTGTGGATAATTCATACCTTGGAAGTTCAGATGAGGTTGCTGATCTCATGAAGATGGTGGAAATTACTTTCATCAAGAACTTTTCAAACTCAAATTATACAGTAGCCATGAAGCTTTTGAAGCCAAAAACTAAAAGTGAAAAACACAGCGTGACATTTTCTTCAGGGTTCCTATCTGGTTGTGCAGTGGCACTATTTGTGGCAACTGTTTTGAAAATAGCATCTCAAAAATTGATGGAGAGGGAAGATGGTACTCATTACATGGAAAATATATTTCCACTTTACAGTCTGTTTGGCTTTGTTGTCCTGCACATGCTCATGTATGCAGCAGACTTATACTTCTGGAGATGTTGTCGAGTTAACTATCCTTTTATCTTTGGTTCCAAGAGAGGAACTGAATTGGGTTGGCAAGAAGTTTTCCTTCTTGGTGCTGGTTTTGCAGTACTTGCATCGGCCAGCTTCCTGGCAAACTTATACTTGGACAGGGACCCCAGCACTCAAAAGTATAGAACAGAAGCTGAGAAGGTTCCTTTAGGCACAACAGCACTTATTCTTCTCATCGCCTTTTGCCCATTCAACATTCTATACAAGTCAAGTCGCTTTTTCTTCATCCGCTGTATCCTACGCTGTATATCTGCTCCTCTGTGCAAGGTTAAGTTTCCAGATTATTTTTTGGCAGATCAGCTTACTAGTCAGGTACAAGCTTCAAGATGTATTGTGCTGTATATTTGCTACTATGGTTTAGGAGAATACTCAAGGAAGCAAAACAAGTGCCACACACATGGTGTCTACAACACTCTCTCCTTCATTATTGCTGTCATACCATTTTGGCTGCGGTTCTTACAGTGCATCCGTCGTTTACTTGAAGAAAAAGATTCAATGCATGGCTACAATGCTCTTAAGTACCTCTCGACAATTGTTGCTGTCCTCATTAGAACTGCTTGTGAATTAAGAAAAGGCGCTACCTGGATGGTGTTAGCCTTGATTAGTTCCGCAGTTGCTGTGTTGATGAATACATACTGGGACATTGTTGTTGACTGGGGACTTCTGCGAAAACACTCAAAGAACAAGTACTTGAGAGACCGGCTTTTAGTATCCAAGAAGTCCGTCTATTTTGCAGCGATGATATTAAATATACTATTGAGAATTGCTTGGATCCAGTTGGTGCTGGCATTCAACTTGCGTTCATTTCAAAAGGTTGCTGCGACTACATTGATATCTTGCTTGGAAATCATTCGCCGTGGTCTTTGGAACTTCTTCAGTTTGGAGAACGAGCATCTGAACAACGTTAACAAGTATCGATCATTCAAGTCAGTTCCACTTCCATTCAGCTACTCCGACGATGATAATGAGAAGGATGATTGA 2484 40.9 MVTMHRHSSVSCRMADTSTDFWMWLLANELEYQRARLIFEEIRRMKFENEFKKHMVPEWTDAYVDYNGLKRLLREISCEKQIKKSRGTFWRSKKKPTVNGKCNELTSQPRKCQIMKDIENQVGDIDRSQLHDHSHLSKSCSHRKFQEISEIEMTFLRKLDEELNKVNSFYKENVEAVTKEASVLSKQMETLIALRRKMEISPLTERHDSHAEVSTIPLSTTLQTPCPSGGVHLDSVVEMDANNQREQKESNWGSELDQVHTEVSSSKHLEKVTTLENNQYPQEILKHVKVVNVFSSRKSTAKDICKNFEEDDLDVDQDDRSKIEEQLKKAFAEFYQKLHSLKQYSFMNLSAFARIMKKYEKVSSKVAAKSYMEIVDNSYLGSSDEVADLMKMVEITFIKNFSNSNYTVAMKLLKPKTKSEKHSVTFSSGFLSGCAVALFVATVLKIASQKLMEREDGTHYMENIFPLYSLFGFVVLHMLMYAADLYFWRCCRVNYPFIFGSKRGTELGWQEVFLLGAGFAVLASASFLANLYLDRDPSTQKYRTEAEKVPLGTTALILLIAFCPFNILYKSSRFFFIRCILRCISAPLCKVKFPDYFLADQLTSQVQASRCIVLYICYYGLGEYSRKQNKCHTHGVYNTLSFIIAVIPFWLRFLQCIRRLLEEKDSMHGYNALKYLSTIVAVLIRTACELRKGATWMVLALISSAVAVLMNTYWDIVVDWGLLRKHSKNKYLRDRLLVSKKSVYFAAMILNILLRIAWIQLVLAFNLRSFQKVAATTLISCLEIIRRGLWNFFSLENEHLNNVNKYRSFKSVPLPFSYSDDDNEKDD 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33861040 33866537 - ClG42_05g0260400.10 Clacu05g2604 250351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2604 827 ProSiteProfiles EXS domain profile. 632 826 IPR004342 GO:0016020(InterPro)
Clacu05g2604 827 Pfam SPX domain 45 373 IPR004331 -
Clacu05g2604 827 Pfam EXS family 464 800 IPR004342 GO:0016020(InterPro)
Clacu05g2604 827 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 45 826 - GO:0000822(PANTHER)|GO:0005737(PANTHER)|GO:0005794(PANTHER)|GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0006817(PANTHER)|GO:0015114(PANTHER)|GO:0016036(PANTHER)
Clacu05g2604 827 ProSiteProfiles SPX domain profile. 45 373 IPR004331 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2604 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2604 Clacu-Chr5:33861040 Clacu09g2209 Clacu-Chr9:36856023 6.80E-192 dispersed
Clacu05g2602 Clacu-Chr5:33850564 Clacu05g2604 Clacu-Chr5:33861040 3.70E-190 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g962 . . . . . . . . . Cmo18g01153 . Cma18g01131 . Car18g01044 Sed07g1954 Cpe09g00196 . Bhi07g01532 Tan04g1053 Cmetu10g1096 Lac13g0340 Hepe10g1766 . . Cla05g02421 Cam05g2603 Cec05g2635 Cco05g2674 Clacu05g2604 Cmu05g2457 Cre05g2573 . . . . Lsi04g00395 . Chy10g01027 Cme10g00391 . . Bda07g01518 . . . . . . Cmo04g02908 . . . . Car15g00257 Cpe13g00962 . . . . . . . . . . . . . . . . . Chy09g00229 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193