Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu05g2607 ATGACGAGAGCTTTTAGAAGACGGACTTCGTATTCAAGGCCTACAGATCGCCTCCGATTCCAGGCATCGGCGGACGGTGCTACGAAATCTGGATTCATCAGAGATATGAAGCTGAAGGAGATCTTGACTACTTTGCTTATAGGCCTTCCCTTGGTTGTTTTTGTTGTTTTGGTTCTTAGGAATCCAGCGGTGGATCTCTCTCTGGGTTTTGCGGAAGCCAGAGCATTGGGAAGAGTGGCCACTAATGGCGGTTCTGAGAGTTCAGGTTCAGAAAACGGTTTCTCTCGACTTTCCAATAGAGACAAACTTATTGGAGGTCTTCTCCTTCCTGGATTTGATGAAGGATCATGCTTAAGCAGATATCAATCCAGTTTATATCGAAGAACTTCAACCCACAAACCTTCTCCTTACCTCCTCTCGAAGCTTAGAGACTACGAAGCACTTCATCGACAGTGTGGTCCCCATACGAAACCATACGATGAAGCAGTAGAGCAACTCAGATCTGGCAGTAGTGTTAGTTTGTCAGAGTGTAAATATGTTGTGTGGATATCTTATAGTGGCTTGGGAAACAAGATACTCACTTTGGCTTCTGCATTTCTTTATGCCCTCCTTACCAATCGTGTCTTGCTTGTTGATCCAGGGAAGGATATGGCTGATCTATTTTGTGAGCCTTTCCCAGAAAAATCTTGGTTGCTACCAAATGACTTCCCCTTGGTGGATCAATTCAGCCATTTTGATTCGAAATTTCCTAATTGTCTTGGAAATATGCTTAAGATGAACACTCTAAACACGTCAACAGAATCACTCCCATCCTATCTATACCTACATTTGGTCCATGATTATGATGATCACGACAAGCTCTTCTTCTGTGATCAAGAACAGTCTCTTTTGGGCAGGATCCCTTGGCTAATACTGAAGACAGATAACTACTTTGTTCCATCTCTCTTCTTGATCCCATCGTTTGAGCACGAACTCAGTAACTTGTTCCCCCAAAAAGACACCGTCTTCCATCATCTGGGCCGGTATCTTTTCCACCCATCGAACCATGTTTGGGGACTAATAACGAGATACTACGAAGCATATCTATCAAGTGCTGATGAAAGAATAGGAATTCAAGTAAGAGTGTTCGAGAGTGAACCGGGGCCATTTGAACATATAATGGATCAGATTTTAGGCTGTACTCTTAAGGAGAAGTTACTGCCTGAGGTAGACAAGGAAGGCTTCTCTTCTGTTCCTTTGGAACGCCCAAGTGTAAAAGCTGTTTTGATGACATCTTTAAGTTCTGGATATTATGAAAAATTGAGAAGCTTGTACTGGGAATACCCGACCACAAGTGGAGAGGTCATTGCAGTTTATCAGCCGAGCTACGAAATGTATCAGCAGACAGAGAAGAAGACTCACAATAGGAAAGCATGGGCAGAAATGTACCTTCTGAGTTTGAGCGATGTGTTGGTGACCAGTGCATGGTCAACATTCGGGTATGTGGCTCAAGGACTCGGCGGATCGAAGCCATGGATTCTTTACAAGGCTGAGAACATGACCACGCCCGATCCACCATGTCGTAGGGCAATGTCAATGGAGCCTTGCTTTCATGCTCCTCCATTCTATGACTGCAAGGCAAAGAAAGGAATAGATACTGGTGAAGTTGTTCCACATGTAAGACATTGTGAAGACATGAACTGGGGGCTTAAGCTTGTTCACCATGAGGATTTATAA 1716 43.88 MTRAFRRRTSYSRPTDRLRFQASADGATKSGFIRDMKLKEILTTLLIGLPLVVFVVLVLRNPAVDLSLGFAEARALGRVATNGGSESSGSENGFSRLSNRDKLIGGLLLPGFDEGSCLSRYQSSLYRRTSTHKPSPYLLSKLRDYEALHRQCGPHTKPYDEAVEQLRSGSSVSLSECKYVVWISYSGLGNKILTLASAFLYALLTNRVLLVDPGKDMADLFCEPFPEKSWLLPNDFPLVDQFSHFDSKFPNCLGNMLKMNTLNTSTESLPSYLYLHLVHDYDDHDKLFFCDQEQSLLGRIPWLILKTDNYFVPSLFLIPSFEHELSNLFPQKDTVFHHLGRYLFHPSNHVWGLITRYYEAYLSSADERIGIQVRVFESEPGPFEHIMDQILGCTLKEKLLPEVDKEGFSSVPLERPSVKAVLMTSLSSGYYEKLRSLYWEYPTTSGEVIAVYQPSYEMYQQTEKKTHNRKAWAEMYLLSLSDVLVTSAWSTFGYVAQGLGGSKPWILYKAENMTTPDPPCRRAMSMEPCFHAPPFYDCKAKKGIDTGEVVPHVRHCEDMNWGLKLVHHEDL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33872974 33875449 + ClG42_05g0260700.10 Clacu05g2607 250354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu05g2607 571 PANTHER FUCOSYLTRANSFERASE 2-RELATED 40 568 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Clacu05g2607 571 Pfam Xyloglucan fucosyltransferase 98 539 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
Clacu05g2607 571 Gene3D - 174 225 - -
Clacu05g2607 571 FunFam Galactoside 2-alpha-L-fucosyltransferase 175 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu05g2607 K13681 - - csv:101216541 1048.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1075 Clacu-Chr7:25306640 Clacu05g2607 Clacu-Chr5:33872974 3.60E-157 transposed
Clacu04g1271 Clacu-Chr4:26788639 Clacu05g2607 Clacu-Chr5:33872974 4.20E-196 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2607 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 1.9e-158 556.2
Clacu04g1271 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 4.9e-151 531.6
Clacu05g2607 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.9 1.8e-166 582.8
Clacu04g1271 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 1.1e-160 563.5
Clacu07g1075 . 56 543 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 4.9e-140 495.0
Clacu05g2607 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.5 7.2e-138 487.6
Clacu04g1271 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.6 1.8e-133 473.0
Clacu02g0635 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 64.6 5.5e-192 667.5
Clacu05g1164 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 2.1e-183 639.0
Clacu08g1022 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 1.8e-169 592.4
Clacu05g2607 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.6e-126 449.5
Clacu05g2607 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.1e-180 627.1
Clacu04g1271 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.3e-169 592.0
Clacu05g2607 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.4e-201 697.6
Clacu04g1271 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 4.0e-188 654.8
Clacu05g2607 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 4.1e-155 545.0
Clacu04g1271 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 4.3e-144 508.4
Clacu05g2607 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.2e-149 526.9
Clacu04g1271 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 2.8e-138 489.2
Clacu05g2607 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 5.2e-153 538.1
Clacu04g1271 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 8.4e-143 504.2
Clacu02g0635 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 63.9 3.8e-190 661.4
Clacu05g1164 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 7.5e-186 647.1
Clacu05g2607 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.6e-126 449.5
Clacu05g2607 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.1e-180 627.1
Clacu04g1271 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.3e-169 592.0
Clacu05g2607 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 5.4e-201 697.6
Clacu04g1271 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 4.0e-188 654.8
Clacu05g2607 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.1 9.1e-180 627.1
Clacu04g1271 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.3e-169 592.0
Clacu05g2607 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.5 2.6e-126 449.5
Clacu05g2607 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 55.1 5.2e-153 538.1
Clacu04g1271 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 8.4e-143 504.2
Clacu05g2607 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.4 1.2e-149 526.9
Clacu04g1271 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 2.8e-138 489.2
Clacu05g2607 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.3 1.9e-158 556.2
Clacu04g1271 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 4.9e-151 531.6
Clacu05g2607 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.9 1.8e-166 582.8
Clacu04g1271 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.9 1.1e-160 563.5
Clacu07g1075 . 56 543 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 4.9e-140 495.0
Clacu05g2607 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.5 7.2e-138 487.6
Clacu04g1271 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.6 1.8e-133 473.0
Clacu05g2607 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 4.1e-155 545.0
Clacu04g1271 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 4.3e-144 508.4
Clacu02g0635 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 63.9 3.8e-190 661.4
Clacu05g1164 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 7.5e-186 647.1
Clacu02g0635 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 64.6 5.5e-192 667.5
Clacu05g1164 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 2.1e-183 639.0
Clacu08g1022 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 1.8e-169 592.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 33